View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_low_33 (Length: 241)

Name: NF2013_low_33
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_low_33
NF2013_low_33
[»] chr8 (13 HSPs)
chr8 (1-222)||(2631610-2631830)
chr8 (5-171)||(26657594-26657759)
chr8 (152-212)||(33956470-33956530)
chr8 (27-164)||(10568308-10568447)
chr8 (105-164)||(16043728-16043787)
chr8 (27-126)||(43848110-43848212)
chr8 (123-164)||(13567009-13567051)
chr8 (4-93)||(21593187-21593276)
chr8 (34-126)||(29043139-29043234)
chr8 (132-160)||(15646184-15646212)
chr8 (9-73)||(16932553-16932617)
chr8 (131-159)||(16932671-16932699)
chr8 (4-164)||(45268820-45268982)
[»] scaffold0236 (1 HSPs)
scaffold0236 (27-217)||(6282-6476)
[»] scaffold1667 (1 HSPs)
scaffold1667 (27-214)||(711-896)
[»] scaffold0044 (1 HSPs)
scaffold0044 (27-214)||(20743-20928)
[»] chr1 (10 HSPs)
chr1 (28-216)||(5569383-5569575)
chr1 (105-177)||(46391596-46391668)
chr1 (78-160)||(20149812-20149892)
chr1 (52-160)||(1624070-1624176)
chr1 (97-160)||(28015932-28015998)
chr1 (106-173)||(10433126-10433192)
chr1 (105-164)||(15120948-15121009)
chr1 (105-164)||(15145136-15145197)
chr1 (110-164)||(17745489-17745545)
chr1 (105-163)||(31893044-31893106)
[»] chr2 (9 HSPs)
chr2 (118-222)||(15894899-15895004)
chr2 (135-222)||(18142808-18142896)
chr2 (112-163)||(1490589-1490640)
chr2 (110-177)||(16110037-16110101)
chr2 (1-120)||(36802247-36802366)
chr2 (21-163)||(40926463-40926604)
chr2 (132-161)||(20374230-20374259)
chr2 (135-164)||(21862518-21862547)
chr2 (79-164)||(28698127-28698211)
[»] chr3 (8 HSPs)
chr3 (116-222)||(32222543-32222651)
chr3 (132-164)||(10287788-10287820)
chr3 (128-167)||(25374409-25374449)
chr3 (112-170)||(33537222-33537280)
chr3 (123-161)||(25771477-25771515)
chr3 (139-176)||(25807460-25807497)
chr3 (132-160)||(10945900-10945928)
chr3 (106-164)||(20303665-20303725)
[»] chr6 (12 HSPs)
chr6 (105-164)||(30492276-30492336)
chr6 (27-176)||(10301741-10301888)
chr6 (106-163)||(20589570-20589626)
chr6 (21-173)||(24373440-24373591)
chr6 (106-182)||(22705230-22705308)
chr6 (106-175)||(1448715-1448783)
chr6 (2-125)||(12435927-12436049)
chr6 (11-86)||(24205471-24205546)
chr6 (123-161)||(1110396-1110434)
chr6 (112-169)||(11319398-11319456)
chr6 (27-125)||(14372194-14372292)
chr6 (110-164)||(15141992-15142048)
[»] scaffold0012 (1 HSPs)
scaffold0012 (27-160)||(103642-103776)
[»] chr7 (14 HSPs)
chr7 (34-164)||(38993112-38993243)
chr7 (1-164)||(14073721-14073884)
chr7 (1-164)||(14383749-14383912)
chr7 (105-170)||(28783654-28783719)
chr7 (110-161)||(8612737-8612789)
chr7 (11-136)||(1633267-1633390)
chr7 (129-166)||(1799732-1799770)
chr7 (30-88)||(2040089-2040147)
chr7 (78-163)||(17157615-17157699)
chr7 (135-164)||(22980674-22980703)
chr7 (105-177)||(27845786-27845854)
chr7 (52-164)||(3399584-3399698)
chr7 (114-164)||(7324254-7324306)
chr7 (132-164)||(22846882-22846914)
[»] chr4 (3 HSPs)
chr4 (27-166)||(20383880-20384019)
chr4 (112-171)||(21180112-21180173)
chr4 (34-164)||(38499865-38499999)
[»] scaffold0050 (1 HSPs)
scaffold0050 (27-175)||(12865-13010)
[»] scaffold0001 (2 HSPs)
scaffold0001 (105-164)||(56619-56677)
scaffold0001 (139-183)||(20797-20841)
[»] scaffold0911 (1 HSPs)
scaffold0911 (27-160)||(2227-2361)
[»] scaffold0607 (1 HSPs)
scaffold0607 (1-164)||(289-455)
[»] scaffold1390 (1 HSPs)
scaffold1390 (106-161)||(1292-1350)
[»] scaffold0257 (1 HSPs)
scaffold0257 (105-181)||(16110-16188)
[»] scaffold0111 (1 HSPs)
scaffold0111 (21-93)||(41237-41309)
[»] scaffold0045 (1 HSPs)
scaffold0045 (105-164)||(80267-80327)
[»] chr5 (2 HSPs)
chr5 (42-126)||(34995472-34995555)
chr5 (132-160)||(35358534-35358562)


Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 2631830 - 2631610
Alignment:
Q  1 tttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2631830 tttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaggttggcaccccgatgaatcttcatcctatgccaccaatatctat 2631731  T
Q  101 aaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2631730 aaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaa-aaaaaggaaaagataaacaacggattaa 2631632  T
Q  201 gggaatctgtaagtaggtagac 222  Q
    ||||||||||||||||||||||    
T  2631631 gggaatctgtaagtaggtagac 2631610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 26657759 - 26657594
Alignment:
Q  5 taagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaa 104  Q
    ||||| ||||||||  ||||| ||||||||||| || |||||| || |||||||||||||  ||   || || ||||||||||||||||  |||| ||||    
T  26657759 taagcaaggagagaggacatgcatcaagaggaaacaccgacatcccaactaagttggcacttcgggaaacctccatcctatgccaccaaactcta-aaaa 26657661  T
Q  105 tttatttaaaaaaggggaaaaattatatacaagagg--gggactaggccaaaaccctca-aaacaagaaa 171  Q
    || ||| ||||||||   |||| | | ||||||| |  ||||||||||||||||||||| ||||||||||    
T  26657660 ttaattaaaaaaagg---aaaaatctgtacaagaagatgggactaggccaaaaccctcagaaacaagaaa 26657594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 212
Target Start/End: Original strand, 33956470 - 33956530
Alignment:
Q  152 aaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaa 212  Q
    |||||||||||||||||||||||||||||||||| || ||||  | || ||||||||||||    
T  33956470 aaaaccctcaaaacaagaaagaaaaaggaaaagaaaatcaacaaactaggggaatctgtaa 33956530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 164
Target Start/End: Original strand, 10568308 - 10568447
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttc-atcctatgccaccaatatctataaaatttatttaaaaaaggggaaaa 125  Q
    ||||||||| | || |||| | || |||| ||||||||||||| ||| |||| |||||||||| ||||  |||| | | |||||| ||||||||||  ||    
T  10568308 atcaagaggcaacatcgacttaccaactaggttggcaccccga-gaaacttccatcctatgccgccaaactctaaagattttattaaaaaaaggggggaa 10568406  T
Q  126 attatatacaa--gagggggactaggccaaaaccctcaaaa 164  Q
    | ||  |||||  ||||||||||||||||||||||||||||    
T  10568407 aataattacaaaggagggggactaggccaaaaccctcaaaa 10568447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 16043728 - 16043787
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaa 164  Q
    |||||| |||||||||||||||| ||||||| ||||||| ||||| |||||||||||||||    
T  16043728 tttattaaaaaaaggggaaaaat-atatacatgaggggggactagaccaaaaccctcaaaa 16043787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 126
Target Start/End: Original strand, 43848110 - 43848212
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaa 123  Q
    |||||| ||||||||| |||| || |||| ||||||||||||  ||| | |||||||||||| ||||| ||   || |||||||||| |||||| |||||    
T  43848110 atcaaggggaagcaacaacatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaatctcagataaaaaatttattaaaaaaaagggaa 43848209  T
Q  124 aaa 126  Q
    |||    
T  43848210 aaa 43848212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 164
Target Start/End: Original strand, 13567009 - 13567051
Alignment:
Q  123 aaaattatatacaagagg-gggactaggccaaaaccctcaaaa 164  Q
    |||| ||||||||||||| ||||||||||||||||||||||||    
T  13567009 aaaaatatatacaagaggagggactaggccaaaaccctcaaaa 13567051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 21593276 - 21593187
Alignment:
Q  4 ataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaa 93  Q
    |||||| ||||||||  ||| | ||||||||| | || ||||||||| |||| |||||||||||||   | |||||||||||||| ||||    
T  21593276 ataagcaaggagagaggacaggcatcaagaggcatcatcgacattccaactaggttggcaccccgagagaccttcatcctatgccgccaa 21593187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 126
Target Start/End: Complemental strand, 29043234 - 29043139
Alignment:
Q  34 ggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaaaaa 126  Q
    |||||||||||||| |  |||| |||||||||||   |||||  ||||||||||||||||| ||   || |||||||||| |||||| ||||||||    
T  29043234 ggaagcaacgacatccaaactaggttggcaccccacagaatccacatcctatgccaccaatctcagataaaaaatttattaaaaaaaagggaaaaa 29043139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 15646184 - 15646212
Alignment:
Q  132 tacaagagggggactaggccaaaaccctc 160  Q
    |||||||||||||||||||||||||||||    
T  15646184 tacaagagggggactaggccaaaaccctc 15646212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 16932553 - 16932617
Alignment:
Q  9 ctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaa 73  Q
    ||||||||||  ||||  ||||||  ||| |||||||||||| |||| |||||||||||||||||    
T  16932553 ctaggagagaggacatacatcaaggagaaacaacgacattccaactatgttggcaccccgatgaa 16932617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 159
Target Start/End: Original strand, 16932671 - 16932699
Alignment:
Q  131 atacaagagggggactaggccaaaaccct 159  Q
    |||||||||||||||||||||||||||||    
T  16932671 atacaagagggggactaggccaaaaccct 16932699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 164
Target Start/End: Original strand, 45268820 - 45268982
Alignment:
Q  4 ataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaa 103  Q
    |||||| ||||||||  ||| | ||||||||| | || |||| | || || | |||||||||||||  || || | ||||||||| ||||  |||| | |    
T  45268820 ataagcaaggagagaggacaggcatcaagaggcaacatcgacttaccaaccaggttggcaccccgagaaacctccttcctatgccgccaaactctagaga 45268919  T
Q  104 atttatttaaaaaa-ggggaaaaattatatacaa--gagggggactaggccaaaaccctcaaaa 164  Q
     |||||| |||||| |||| ||||| || |||||  ||||||||||||||||||||||||||||    
T  45268920 ttttattaaaaaaaagggggaaaataat-tacaaaggagggggactaggccaaaaccctcaaaa 45268982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 217
Target Start/End: Complemental strand, 6476 - 6282
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 126  Q
    |||||||||||| ||||||||| | | || |||||||||||||| || || |||| |||||| ||||| || | |||||  |  ||||||||||  ||||    
T  6476 atcaagaggaagaaacgacatttcaattaggttggcaccccgattaacctccatcttatgccgccaatctcaaaaaaataaaaataaaaaagggagaaaa 6377  T
Q  127 t-tatatacaaga--gggggactaggccaaaaccct-caaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagtagg 217  Q
    | |||||||||||  |||||| |||| ||||| ||| |||||||||||||||||| ||||||| |||||||  ||||||||||||||||||||||    
T  6376 tgtatatacaagaaggggggattaggtcaaaaaccttcaaaacaagaaagaaaaaagaaaagagaaacaacatattaagggaatctgtaagtagg 6282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1667 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1667
Description:

Target: scaffold1667; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 711 - 896
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatt-taaaaaaggggaaaa 125  Q
    |||||||| |||||||||||| ||||||| ||||||||| ||| ||| || ||||||||||| |||  | ||  ||| ||||||  |||||||||| |||    
T  711 atcaagagaaagcaacgacatcccgactaggttggcacctcgaagaacctccatcctatgccgcca--aactcaaaattttattaaaaaaaagggggaaa 808  T
Q  126 attatatacaagag-ggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagt 214  Q
    | |||||||||||| ||| ||||| |||||||||||||||||| ||||||||  | ||||| || |||| || |||||||||||||||||    
T  809 aatatatacaagagagggaactagaccaaaaccctcaaaacaataaagaaaa--ggaaagaaaatcaacagactaagggaatctgtaagt 896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 20928 - 20743
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatt-taaaaaaggggaaaa 125  Q
    |||||||| |||||||||||| ||||||| ||||||||| ||| ||| || ||||||||||| |||  | ||  ||| ||||||  |||||||||| |||    
T  20928 atcaagagaaagcaacgacatcccgactaggttggcacctcgaagaacctccatcctatgccgcca--aactcaaaattttattaaaaaaaagggggaaa 20831  T
Q  126 attatatacaagag-ggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagt 214  Q
    | |||||||||||| ||| ||||| |||||||||||||||||| ||||||||  | ||||| || |||| || |||||||||||||||||    
T  20830 aatatatacaagagagggaactagaccaaaaccctcaaaacaataaagaaaa--ggaaagaaaatcaacagactaagggaatctgtaagt 20743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 28 - 216
Target Start/End: Original strand, 5569383 - 5569575
Alignment:
Q  28 tcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaat 127  Q
    |||||||||| ||||| | |||| |||| ||||  | ||||||||| ||||||||||||||  |||| || ||||  ||| |  |||||||| ||||||     
T  5569383 tcaagaggaaccaacggcgttccaactaggttgataacccgatgaaccttcatcctatgccgtcaatctcaataatttttttaaaaaaaaggcgaaaaag 5569482  T
Q  128 -tatatacaagagggggactaggccaaaaccctcaaaacaagaaagaa---aaaggaaaagataaacaacggattaagggaatctgtaagtag 216  Q
     || ||||||||||||||  | || |||||||||||||||||||||||   ||| |||||||||||||||  ||||||||||| |||| ||||    
T  5569483 gtaaatacaagagggggatcaagctaaaaccctcaaaacaagaaagaaaataaaagaaaagataaacaacaaattaagggaatttgtaggtag 5569575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 46391596 - 46391668
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaaga-gggggactaggccaaaaccctcaaaacaagaaagaaaaa 177  Q
    |||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||    
T  46391596 tttattaaaaaaaggggaaaaaatatatacaagaggggggactaggccaaaaccctcaaaa-aacaaagaaaaa 46391668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 20149812 - 20149892
Alignment:
Q  78 catcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaattatatacaa-gagggggactaggccaaaaccctc 160  Q
    ||||||||||||||||| |   || | |||||| |||||||||| |||| ||||| ||| ||||||||||||||||||||||||    
T  20149812 catcctatgccaccaatct---tatattttattaaaaaaaggggtaaaaatatattcaaagagggggactaggccaaaaccctc 20149892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 160
Target Start/End: Original strand, 1624070 - 1624176
Alignment:
Q  52 actaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaattatatacaagaggggg-actaggc 150  Q
    |||| ||||| |||||||| ||||| |||||||  || ||||  |||| ||||||||||||||||| ||||||||  ||| | | ||||||| |||||||    
T  1624070 actaggttggtaccccgataaatctccatcctacaccgccaaactcta-aaaatttatttaaaaaatgggaaaaa--atacaaaggagggggaactaggc 1624166  T
Q  151 caaaaccctc 160  Q
    ||||||||||    
T  1624167 caaaaccctc 1624176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 160
Target Start/End: Complemental strand, 28015998 - 28015932
Alignment:
Q  97 ctataaaatttatttaaaaaaggggaaaaattatatacaaga----gggggactaggccaaaaccctc 160  Q
    |||||||||||  |||||||| ||||||||| ||||||||||    ||||||||||||||||||||||    
T  28015998 ctataaaattttattaaaaaaagggaaaaat-atatacaagaagaggggggactaggccaaaaccctc 28015932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 10433192 - 10433126
Alignment:
Q  106 ttatttaaaaaaggggaaaaattatatacaagaggg-ggactaggccaaaaccctcaaaacaagaaaga 173  Q
    ||||| ||||||||||||||  ||| |||||||||| ||| || |||||||||||| ||||||||||||    
T  10433192 ttattaaaaaaaggggaaaa--tatgtacaagagggaggaatatgccaaaaccctcgaaacaagaaaga 10433126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 15120948 - 15121009
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagagg---gggactaggccaaaaccctcaaaa 164  Q
    |||||||||||||||  |||||| | ||||||||||   ||||||||||||||||||||||||    
T  15120948 tttatttaaaaaaggaaaaaaataa-atacaagaggagggggactaggccaaaaccctcaaaa 15121009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Original strand, 15145136 - 15145197
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagagg---gggactaggccaaaaccctcaaaa 164  Q
    |||||||||||||||  |||||| | ||||||||||   ||||||||||||||||||||||||    
T  15145136 tttatttaaaaaaggaaaaaaataa-atacaagaggagggggactaggccaaaaccctcaaaa 15145197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 17745489 - 17745545
Alignment:
Q  110 ttaaaaaaggggaaaa-attatatacaagagggg-gactaggccaaaaccctcaaaa 164  Q
    |||||||||| ||||| | ||| ||||||||||| ||||||||||||||||||||||    
T  17745489 ttaaaaaaggagaaaataatatgtacaagaggggggactaggccaaaaccctcaaaa 17745545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 31893106 - 31893044
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaa---gaggggg-actaggccaaaaccctcaaa 163  Q
    |||||| |||||||||||||||  ||||||||   ||||||| ||||||||||||||||||||    
T  31893106 tttattaaaaaaaggggaaaaaaaatatacaaagagaggggggactaggccaaaaccctcaaa 31893044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 9e-20; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 118 - 222
Target Start/End: Original strand, 15894899 - 15895004
Alignment:
Q  118 ggggaaaaattatatacaagaggg-ggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagtag 216  Q
    |||| |||| ||||||||||| || ||||||| | |||||||||||||||||||||||||  || |||||||||||| ||||||| |||||||||| |||    
T  15894899 gggggaaaagtatatacaagatggaggactagactaaaaccctcaaaacaagaaagaaaattgataagataaacaacagattaagagaatctgtaaatag 15894998  T
Q  217 gtagac 222  Q
    | ||||    
T  15894999 gcagac 15895004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 135 - 222
Target Start/End: Original strand, 18142808 - 18142896
Alignment:
Q  135 aagagggg-gactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaagtaggtagac 222  Q
    |||||||| |||||| | ||||||||||||||||||||||||| |||||||| || ||||  | || |||||| |||||||||| ||||    
T  18142808 aagaggggtgactagactaaaaccctcaaaacaagaaagaaaacggaaaagaaaaccaacatactaggggaatatgtaagtaggcagac 18142896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 1490640 - 1490589
Alignment:
Q  112 aaaaaaggggaaaaattatatacaagag-ggggactaggccaaaaccctcaaa 163  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  1490640 aaaaaaggggaaaaat-atatacaagaggggggactaggccaagaccctcaaa 1490589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 16110037 - 16110101
Alignment:
Q  110 ttaaaaaaggggaaaaattatatacaagagggg-gactaggccaaaaccctcaaaacaagaaagaaaaa 177  Q
    |||||||||||||||||    |||||||||||| ||||||||||||||||||| || |||||| |||||    
T  16110037 ttaaaaaaggggaaaaa----atacaagaggggggactaggccaaaaccctcagaagaagaaataaaaa 16110101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 36802247 - 36802366
Alignment:
Q  1 tttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctat 100  Q
    ||||||||| ||||||||  ||  |||| |||||| | || ||||||  | |||| |||||||||||||  || || ||||||||||| ||||  ||||     
T  36802247 tttataagcaaggagagaggacgggtattaagaggcaacatcgacatctcaactaggttggcaccccgagaaacctccatcctatgccgccaaactctaa 36802346  T
Q  101 aaaatttatttaaaaaaggg 120  Q
    |||| |||||||||||||||    
T  36802347 aaaaattatttaaaaaaggg 36802366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 163
Target Start/End: Original strand, 40926463 - 40926604
Alignment:
Q  21 acatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggg 120  Q
    ||||| |||| |||||| || |||||| || |||| ||||||||||||   || || ||||||||||| |||  | |||||||||||| |||||||||||    
T  40926463 acatgcatcaggaggaaacatcgacatcccaactaggttggcaccccgggaaacctccatcctatgccgcca--aactataaaattta-ttaaaaaaggg 40926559  T
Q  121 gaaaaattatatacaaga----gggggactaggccaaaaccctcaaa 163  Q
      |||| |||||||||||    |||||| |||||||||||| |||||    
T  40926560 --aaaaatatatacaagaagaggggggattaggccaaaaccatcaaa 40926604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 161
Target Start/End: Original strand, 20374230 - 20374259
Alignment:
Q  132 tacaagagggggactaggccaaaaccctca 161  Q
    ||||||||||||||||||||||||||||||    
T  20374230 tacaagagggggactaggccaaaaccctca 20374259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 21862547 - 21862518
Alignment:
Q  135 aagagggggactaggccaaaaccctcaaaa 164  Q
    ||||||||||||||||||||||||||||||    
T  21862547 aagagggggactaggccaaaaccctcaaaa 21862518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 28698211 - 28698127
Alignment:
Q  79 atcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaa 164  Q
    |||||| ||| ||||  |||| |||||||||| |||||||| | ||||||| | |  || ||||||||||||||||||||||||||    
T  28698211 atcctaagccgccaaactctaaaaaatttattaaaaaaaggaggaaaattacaaaggag-gggggactaggccaaaaccctcaaaa 28698127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 222
Target Start/End: Original strand, 32222543 - 32222651
Alignment:
Q  116 aaggggaaaaattatatacaa-ga-gggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaagataaacaacggattaagggaatctgtaag 213  Q
    |||||| |||| ||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||| || |||| || || ||||||||||||     
T  32222543 aagggggaaaaatatatacaaagacgggggactagaccaaaactctcaaaacaagaaagaaaaaggaaaagaaaaccaacagactaggggaatctgtaat 32222642  T
Q  214 taggtagac 222  Q
    |||| ||||    
T  32222643 taggcagac 32222651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 164
Target Start/End: Original strand, 10287788 - 10287820
Alignment:
Q  132 tacaagagggggactaggccaaaaccctcaaaa 164  Q
    |||||||||||||||||||||||||||||||||    
T  10287788 tacaagagggggactaggccaaaaccctcaaaa 10287820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 167
Target Start/End: Original strand, 25374409 - 25374449
Alignment:
Q  128 tatatacaagag-ggggactaggccaaaaccctcaaaacaa 167  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  25374409 tatatacaagagtggggactaggccaaaaccctcaaaacaa 25374449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 33537280 - 33537222
Alignment:
Q  112 aaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaacaagaa 170  Q
    |||||||||||||||  ||||||||||||||| |||||||||||||||| |||| |||||    
T  33537280 aaaaaaggggaaaaag-atatacaagaggggggactaggccaaaacccttaaaataagaa 33537222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 25771477 - 25771515
Alignment:
Q  123 aaaattatatacaagagggggactaggccaaaaccctca 161  Q
    |||| ||| ||||||||||||||||||||||||||||||    
T  25771477 aaaaatatttacaagagggggactaggccaaaaccctca 25771515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 25807460 - 25807497
Alignment:
Q  139 gggggactaggccaaaaccctcaaaacaagaaagaaaa 176  Q
    ||||||||||||||| |||||||||| |||||||||||    
T  25807460 gggggactaggccaagaccctcaaaataagaaagaaaa 25807497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 10945928 - 10945900
Alignment:
Q  132 tacaagagggggactaggccaaaaccctc 160  Q
    |||||||||||||||||||||||||||||    
T  10945928 tacaagagggggactaggccaaaaccctc 10945900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 20303665 - 20303725
Alignment:
Q  106 ttatttaaaaaaggggaaaaattat-atacaagagggg-gactaggccaaaaccctcaaaa 164  Q
    ||||| |||||||||||||||| || | | |||||||| ||||||||||||||||||||||    
T  20303665 ttattaaaaaaaggggaaaaataattacaaaagaggggggactaggccaaaaccctcaaaa 20303725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 30492336 - 30492276
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagag-ggggactaggccaaaaccctcaaaa 164  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  30492336 tttattaaaaaaaggggaaaaaatatatacaagaggggggactaggccaaaaccctcaaaa 30492276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 176
Target Start/End: Original strand, 10301741 - 10301888
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 126  Q
    |||||||| ||||||| |||| || | || ||| |||| |||| ||| || |||||||| || ||||| || |  || |||||| ||||||  || ||||    
T  10301741 atcaagagaaagcaacaacatcccaattaggtttgcactccgaagaacctccatcctataccgccaatctcaa--aattttattaaaaaaaatgggaaaa 10301838  T
Q  127 ttatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaaa 176  Q
     |||||||||||||||||| || |||||||||||||||||| ||||||||    
T  10301839 atatatacaagagggggaccagaccaaaaccctcaaaacaaaaaagaaaa 10301888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 20589626 - 20589570
Alignment:
Q  106 ttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaa 163  Q
    ||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  20589626 ttattaaaaaaaagggaaaaat-atatacaagagggggactaggccaaaaccctcaaa 20589570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 173
Target Start/End: Complemental strand, 24373591 - 24373440
Alignment:
Q  21 acatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggg 120  Q
    ||||| |||| |||||||||  ||||| || |||| ||||| |||| |  ||| || ||||||||||| ||||| || | || ||| ||| ||||||       
T  24373591 acatgcatcacgaggaagcactgacatcccaactaggttggtaccctggagaacctccatcctatgccgccaatctcaaaaatatt-attaaaaaaaaat 24373493  T
Q  121 gaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaaga 173  Q
    | |||| ||||||||||||||||||||||| ||||||||  ||||||||||||    
T  24373492 ggaaaagtatatacaagagggggactaggcaaaaaccctggaaacaagaaaga 24373440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 22705308 - 22705230
Alignment:
Q  106 ttatttaaaaaaggggaaaaattatatacaa-gaggggg-actaggccaaaaccctcaaaacaagaaagaaaaaggaaa 182  Q
    ||||| ||||||||||  ||| ||||||||| ||||||| | ||||| ||||| |||||||||||||||||||||||||    
T  22705308 ttattaaaaaaaggggggaaaatatatacaaagaggggggattaggctaaaactctcaaaacaagaaagaaaaaggaaa 22705230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 1448783 - 1448715
Alignment:
Q  106 ttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaa 175  Q
    ||||| |||||| |||| |||| || |||||||||||||||||||||| |||||| |||||| |||||||    
T  1448783 ttattaaaaaaaagggataaat-atgtacaagagggggactaggccaagaccctcgaaacaaaaaagaaa 1448715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 125
Target Start/End: Complemental strand, 12436049 - 12435927
Alignment:
Q  2 ttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctata 101  Q
    |||||||| ||||||||  ||||| |||| |||| | || |||||| || |||| |||||||||||||  || || ||||||||||| ||||  || | |    
T  12436049 ttataagcaaggagagaggacatgcatcaggaggcatcatcgacatcccaactaggttggcaccccgacaaacctccatcctatgccgccaagctc-aaa 12435951  T
Q  102 aaatttatttaaaaaaggggaaaa 125  Q
    ||||||||| ||||| ||||||||    
T  12435950 aaatttattaaaaaagggggaaaa 12435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 24205546 - 24205471
Alignment:
Q  11 aggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatg 86  Q
    ||||||||  ||||| ||| |||||||  |||||||| || ||||||||||||||| |||||| || |||||||||    
T  24205546 aggagagaggacatgcatcgagaggaaagaacgacatcccaactaagttggcaccctgatgaacctccatcctatg 24205471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 1110434 - 1110396
Alignment:
Q  123 aaaattatatacaagagggggactaggccaaaaccctca 161  Q
    |||| ||||||||||||||||||||| ||||||||||||    
T  1110434 aaaagtatatacaagagggggactagaccaaaaccctca 1110396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 169
Target Start/End: Complemental strand, 11319456 - 11319398
Alignment:
Q  112 aaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaacaaga 169  Q
    |||||||||| |||| ||| |||||||||||| |||||||||| |||||| ||||||||    
T  11319456 aaaaaagggggaaaaatatgtacaagaggggggactaggccaagaccctcgaaacaaga 11319398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 125
Target Start/End: Original strand, 14372194 - 14372292
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaa 125  Q
    ||||||||| | || |||||| || |||| |||||||| ||||  ||||| ||||||||||| ||||  |||| ||| |||||| |||||| |||||||    
T  14372194 atcaagaggcaacatcgacatcccaactaggttggcactccgagaaatctccatcctatgccgccaaactctaaaaattttattaaaaaaatgggaaaa 14372292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 15141992 - 15142048
Alignment:
Q  110 ttaaaaaaggggaaaaattatatacaa-gagggg-gactaggccaaaaccctcaaaa 164  Q
    ||||| || |||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  15141992 ttaaacaaagggaaaaaatatatacaaagaggggggactaggccaaaaccctcaaaa 15142048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 160
Target Start/End: Complemental strand, 103776 - 103642
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 126  Q
    ||||||||| | || |||||| || |||| |||||||||||||  ||||| |||||||||||  |||  |||| ||| |||||| |||||||||| ||||    
T  103776 atcaagaggcaacatcgacatcccaactaggttggcaccccgagaaatctccatcctatgccgtcaaactctaaaaattttattaaaaaaagggggaaaa 103677  T
Q  127 ttatatacaa--gagggggactaggccaaaaccctc 160  Q
     || ||||||  |||||||||||| |||||||||||    
T  103676 -taaatacaaaggagggggactagaccaaaaccctc 103642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 38993112 - 38993243
Alignment:
Q  34 ggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaaaaattat 130  Q
    |||||||||||||| || |||| ||||||||||||  ||| |  ||||||||||| ||||| ||   || |||||||||| ||||||||||||||   |     
T  38993112 ggaagcaacgacatcccaactaggttggcaccccgcagaacccccatcctatgccgccaatctcagataaaaaatttattaaaaaaaggggaaaa---aa 38993208  T
Q  131 atacaaga-gggggactaggccaaaaccctcaaaa 164  Q
     |||| || ||||||||||||||||||||||||||    
T  38993209 gtacatgaggggggactaggccaaaaccctcaaaa 38993243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 14073884 - 14073721
Alignment:
Q  1 tttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctat 100  Q
    ||||||||| ||||||||  ||| | ||||||||| | || |||| | || |||| |||||||||| ||  || || ||||||||||| ||||  | ||     
T  14073884 tttataagcaaggagagaggaca-gcatcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatgccgccaaactatag 14073786  T
Q  101 aaaatttatttaaaaaaggggaaaaattatatacaa--gagggggactaggccaaaaccctcaaaa 164  Q
    | | |||||| |||||| ||||||||| || |||||  ||||||||||||||||||||||||||||    
T  14073785 agattttattaaaaaaaagggaaaaataat-tacaaaggagggggactaggccaaaaccctcaaaa 14073721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 14383912 - 14383749
Alignment:
Q  1 tttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctat 100  Q
    ||||||||| ||||||||  ||| | ||||||||| | || |||| | || |||| |||||||||| ||  || || ||||||||||| ||||  | ||     
T  14383912 tttataagcaaggagagaggaca-gcatcaagaggcaacatcgacttaccaactaggttggcaccctgagaaacctccatcctatgccgccaaactatag 14383814  T
Q  101 aaaatttatttaaaaaaggggaaaaattatatacaa--gagggggactaggccaaaaccctcaaaa 164  Q
    | | |||||| |||||| ||||||||| || |||||  ||||||||||||||||||||||||||||    
T  14383813 agattttattaaaaaaaagggaaaaataat-tacaaaggagggggactaggccaaaaccctcaaaa 14383749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 28783654 - 28783719
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagagg-gggactaggccaaaaccctcaaaacaagaa 170  Q
    |||||| ||||| |||||||||  |||||||||||| |||||||||||||||||||||||| |||||    
T  28783654 tttattaaaaaacggggaaaaag-atatacaagaggagggactaggccaaaaccctcaaaataagaa 28783719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 8612737 - 8612789
Alignment:
Q  110 ttaaaaaaggggaaaaat-tatatacaagagggggactaggccaaaaccctca 161  Q
    ||||||||||| |||||| |||||||||||| || ||||||||||||||||||    
T  8612737 ttaaaaaagggaaaaaatatatatacaagagtggaactaggccaaaaccctca 8612789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 1633390 - 1633267
Alignment:
Q  11 aggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatt 110  Q
    ||||||||  ||||| ||||||||||| || ||||| ||| |||| |||| ||||||||  || ||  |||||||||| |||  | || ||||||||  |    
T  1633390 aggagagaggacatgcatcaagaggaaacaccgacaatccaactaggttgacaccccgagaaacctcaatcctatgccgcca--aactctaaaattttat 1633293  T
Q  111 taaaaaaggggaaaaattatatacaa 136  Q
    ||||||||||| |||| |||||||||    
T  1633292 taaaaaagggggaaaagtatatacaa 1633267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 166
Target Start/End: Complemental strand, 1799770 - 1799732
Alignment:
Q  129 atatacaagaggg-ggactaggccaaaaccctcaaaaca 166  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  1799770 atatacaagagggtggactaggccaaaaccctcaaaaca 1799732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 2040089 - 2040147
Alignment:
Q  30 aagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgcc 88  Q
    |||||| |||| |||||| || |||| ||||||| ||||||||| ||||||||||||||    
T  2040089 aagaggtagcaccgacatcccaactaggttggcatcccgatgaaccttcatcctatgcc 2040147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 163
Target Start/End: Original strand, 17157615 - 17157699
Alignment:
Q  78 catcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaattatatacaagagggggactaggccaaaaccctcaaa 163  Q
    ||||||||||| ||||  |||| | | |||||| ||||| |||||||||||| | |  || |||||||||||||||||||||||||    
T  17157615 catcctatgccgccaaactctaaagattttattaaaaaagggggaaaaattacaaagtag-gggggactaggccaaaaccctcaaa 17157699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 164
Target Start/End: Original strand, 22980674 - 22980703
Alignment:
Q  135 aagagggggactaggccaaaaccctcaaaa 164  Q
    ||||||||||||||||||||||||||||||    
T  22980674 aagagggggactaggccaaaaccctcaaaa 22980703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 177
Target Start/End: Original strand, 27845786 - 27845854
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagagggg-gactaggccaaaaccctcaaaacaagaaagaaaaa 177  Q
    ||||||||||||||||| |||||     |||||||||| ||||||||||||||||||| || |||||| |||||    
T  27845786 tttatttaaaaaagggggaaaat-----acaagaggggggactaggccaaaaccctcagaaaaagaaataaaaa 27845854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 3399584 - 3399698
Alignment:
Q  52 actaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatt-taaaaaaggggaaaaattatatacaa--gagggggactag 148  Q
    |||| |||||||||||||  || ||||||||||||||  |||  |||| | | ||||||  |||||||||||||||| || |||||  ||| ||||||||    
T  3399584 actaggttggcaccccgagaaaccttcatcctatgccgtcaaactctagagattttattaaaaaaaaggggaaaaataat-tacaaaggagtgggactag 3399682  T
Q  149 gccaaaaccctcaaaa 164  Q
    ||||||||||| ||||    
T  3399683 gccaaaaccctaaaaa 3399698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 7324306 - 7324254
Alignment:
Q  114 aaaaggggaaaaat-tatatacaagaggggg-actaggccaaaaccctcaaaa 164  Q
    |||| ||||||||| |||||| ||||||||| |||||||||||||||||||||    
T  7324306 aaaaagggaaaaatatatataaaagaggggggactaggccaaaaccctcaaaa 7324254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 164
Target Start/End: Complemental strand, 22846914 - 22846882
Alignment:
Q  132 tacaagagggggactaggccaaaaccctcaaaa 164  Q
    |||||||||||||||||||||||||||| ||||    
T  22846914 tacaagagggggactaggccaaaaccctaaaaa 22846882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 166
Target Start/End: Complemental strand, 20384019 - 20383880
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaa-aggggaaaa 125  Q
    |||||| ||||||||||| ||  | |||||||||||| | ||| ||| |  ||||||||||| ||||   |||||||||||  ||||||| || || |||    
T  20384019 atcaaggggaagcaacgatatctcaactaagttggcatctcgaagaacccccatcctatgccgccaag--ctataaaattttattaaaaatagtgggaaa 20383922  T
Q  126 attatatacaagaggggga-ctaggccaaaaccctcaaaaca 166  Q
    | || |||||||||||||| ||||||||||||||||||||||    
T  20383921 agtacatacaagagggggaactaggccaaaaccctcaaaaca 20383880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 21180112 - 21180173
Alignment:
Q  112 aaaaaaggggaaaaattatatacaa-gagg-gggactaggccaaaaccctcaaaacaagaaa 171  Q
    ||||||||||||||| ||||||||| |||| |||||||| ||||||||||||||| ||||||    
T  21180112 aaaaaaggggaaaaaatatatacaaagaggagggactagaccaaaaccctcaaaagaagaaa 21180173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 38499865 - 38499999
Alignment:
Q  34 ggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatc---tataaaatttatttaaaaaaggggaaaaattat 130  Q
    ||||||||| |||| || |||| ||||||||||||   || | |||||||||||| ||||| ||   || ||| |||||| ||||||||| |||||  |     
T  38499865 ggaagcaacaacatcccaactaggttggcaccccgcaaaaccctcatcctatgccgccaatctcagataaaaattttattaaaaaaagggaaaaaaaaaa 38499964  T
Q  131 atacaagagggg-gactaggccaaaaccctcaaaa 164  Q
     |||| |||||| ||||||||||||||||||||||    
T  38499965 gtacatgaggggggactaggccaaaaccctcaaaa 38499999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 12865 - 13010
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 126  Q
    |||||||||||||||||||||| | |||| |||| || ||||| ||| || |||| ||||||  ||  ||||  ||| |||||| ||||||  |||||||    
T  12865 atcaagaggaagcaacgacatttcaactaggttgacatcccgaagaacctccatcatatgccgtca--atctcaaaattttattaaaaaaaaaggaaaaa 12962  T
Q  127 ttatatacaagagggggactaggccaaaaccctcaaaacaagaaagaaa 175  Q
     ||||||||| |||| |||||  |||||||| || ||||||||||||||    
T  12963 -tatatacaaaagggagactataccaaaaccttcgaaacaagaaagaaa 13010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 56677 - 56619
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagaggggg-actaggccaaaaccctcaaaa 164  Q
    |||||| ||||||||||||||  |||||||||||||||| ||||| |||||||||||||||    
T  56677 tttattaaaaaaaggggaaaa--tatatacaagaggggggactagaccaaaaccctcaaaa 56619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 20797 - 20841
Alignment:
Q  139 gggggactaggccaaaaccctcaaaacaagaaagaaaaaggaaaa 183  Q
    |||||||||||||||||||||||||| || | ||||||| |||||    
T  20797 gggggactaggccaaaaccctcaaaataaaacagaaaaaagaaaa 20841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 160
Target Start/End: Original strand, 2227 - 2361
Alignment:
Q  27 atcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 126  Q
    ||||| ||||| || |||| |||| ||||  |||||||||||   || || ||||||||||| ||||  |||| ||| |||||| |||||||||||||||    
T  2227 atcaaaaggaaacaccgacgttccaactagattggcaccccgggaaacctccatcctatgccgccaaactcta-aaattttattaaaaaaaggggaaaaa 2325  T
Q  127 ttat-atacaagagggg-gactaggccaaaaccctc 160  Q
    | || | | |||||||| ||||||||||||||||||    
T  2326 taattacaaaagaggggggactaggccaaaaccctc 2361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 289 - 455
Alignment:
Q  1 tttataagctaggagagaatacatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctat 100  Q
    ||||||||| || |||||  ||||| ||||||||| | || |||| | || ||||  ||||||||||||  || || ||||||||||| ||||  ||||     
T  289 tttataagcaagaagagaggacatgcatcaagaggcaacatcgacttaccaactagtttggcaccccgagaaacctccatcctatgccgccaaactctag 388  T
Q  101 aaaatttatttaaaaaag-gggaaaaattatatacaag--agggggactaggccaaaaccctcaaaa 164  Q
    | | |||||| ||||||| ||||||||| ||  | |||   ||||||||||||||||||||||||||    
T  389 agattttattaaaaaaagagggaaaaataattaaaaaggaggggggactaggccaaaaccctcaaaa 455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1390 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1390
Description:

Target: scaffold1390; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 161
Target Start/End: Original strand, 1292 - 1350
Alignment:
Q  106 ttatttaaaaaaggggaaaaattatatacaagag---ggggactaggccaaaaccctca 161  Q
    |||||||||||| |||||||| ||| ||||| ||   ||||||||||||||||||||||    
T  1292 ttatttaaaaaaagggaaaaaatatgtacaaaagaggggggactaggccaaaaccctca 1350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 181
Target Start/End: Complemental strand, 16188 - 16110
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagaggggg--actaggccaaaaccctcaaaac-aagaaagaaaaaggaa 181  Q
    |||||| ||||||||| |||||| || ||||||||||||  ||||||||||||| ||| |||| |||||| |||||||||    
T  16188 tttattaaaaaaagggtaaaaat-atgtacaagagggggggactaggccaaaacgctcgaaacaaagaaaaaaaaaggaa 16110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 41237 - 41309
Alignment:
Q  21 acatgtatcaagaggaagcaacgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaa 93  Q
    ||||| |||||| ||||||||||| || || |||| ||||||||||||  ||| | |||||||||||| ||||    
T  41237 acatgcatcaaggggaagcaacgaaatcccaactaggttggcaccccgcagaaccctcatcctatgccgccaa 41309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 80327 - 80267
Alignment:
Q  105 tttatttaaaaaaggggaaaaattatatacaagagg-gggactaggccaaaaccctcaaaa 164  Q
    |||||||||||||||||||| | ||  ||||||||| |||||||  |||||||||||||||    
T  80327 tttatttaaaaaaggggaaataataattacaagaggagggactaaaccaaaaccctcaaaa 80267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 34995472 - 34995555
Alignment:
Q  42 cgacattccgactaagttggcaccccgatgaatcttcatcctatgccaccaatatctataaaatttatttaaaaaaggggaaaaa 126  Q
    |||||| || |||| |||||||||||||   | || ||||||||||||||||  || | |||||||||| |||||||||||||||    
T  34995472 cgacatcccaactaggttggcaccccgagataactccatcctatgccaccaaactcga-aaaatttattaaaaaaaggggaaaaa 34995555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 35358562 - 35358534
Alignment:
Q  132 tacaagagggggactaggccaaaaccctc 160  Q
    |||||||||||||||||||||||||||||    
T  35358562 tacaagagggggactaggccaaaaccctc 35358534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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