View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_36 (Length: 218)
Name: NF2013_low_36
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 96 - 218
Target Start/End: Complemental strand, 15593740 - 15593617
Alignment:
| Q |
96 |
catgatgaacttttgaatagagtac-atgtaacaggactggttttgctctataaagcttgaacttgaacacctacatgacattgacacgttgacaccact |
194 |
Q |
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| T |
15593740 |
catgatgaacttttgaatacagtactatgtaataggactggttttgatctataaagcttgaacgtgaatgcttacatgacattgacacattgacaccact |
15593641 |
T |
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| Q |
195 |
aataatttgaaaaaatagaataat |
218 |
Q |
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| T |
15593640 |
aataatttgaaaaaatagattaat |
15593617 |
T |
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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 210
Target Start/End: Complemental strand, 42720967 - 42720925
Alignment:
| Q |
168 |
acatgacattgacacgttgacaccactaataatttgaaaaaat |
210 |
Q |
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| T |
42720967 |
acatgacactgacacgttgacaccgctaataatttgaaaaaat |
42720925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 5096169 - 5096131
Alignment:
| Q |
172 |
gacattgacacgttgacaccactaataatttgaaaaaat |
210 |
Q |
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| T |
5096169 |
gacattgacacgtcgacaccgctaataatttgaaaaaat |
5096131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 12941008 - 12940970
Alignment:
| Q |
172 |
gacattgacacgttgacaccactaataatttgaaaaaat |
210 |
Q |
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| T |
12941008 |
gacactgacacgttgacacaactaataatttgaaaaaat |
12940970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 212
Target Start/End: Complemental strand, 25831726 - 25831682
Alignment:
| Q |
168 |
acatgacattgacacgttgacaccactaataatttgaaaaaatag |
212 |
Q |
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| T |
25831726 |
acataacattgacacgtagacaccactaataatttaagaaaatag |
25831682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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