View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_low_39 (Length: 207)

Name: NF2013_low_39
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_low_39
NF2013_low_39
[»] chr7 (11 HSPs)
chr7 (1-207)||(25635820-25636026)
chr7 (1-140)||(39653440-39653579)
chr7 (5-133)||(47363694-47363821)
chr7 (54-121)||(10493372-10493439)
chr7 (37-118)||(31742971-31743053)
chr7 (27-140)||(33049199-33049312)
chr7 (49-120)||(7493067-7493138)
chr7 (97-149)||(35451041-35451093)
chr7 (1-61)||(10493472-10493532)
chr7 (1-46)||(45435439-45435484)
chr7 (80-121)||(45435550-45435591)
[»] chr4 (7 HSPs)
chr4 (1-134)||(38411858-38411991)
chr4 (1-186)||(28147030-28147228)
chr4 (1-138)||(25968047-25968183)
chr4 (1-134)||(55606236-55606368)
chr4 (1-140)||(13198064-13198202)
chr4 (54-140)||(11440664-11440753)
chr4 (84-140)||(29866152-29866208)
[»] chr6 (3 HSPs)
chr6 (1-121)||(9177642-9177759)
chr6 (14-138)||(26660602-26660726)
chr6 (14-138)||(26766573-26766697)
[»] chr3 (4 HSPs)
chr3 (1-174)||(11783353-11783529)
chr3 (1-114)||(7299155-7299267)
chr3 (80-119)||(53527191-53527230)
chr3 (27-112)||(46475662-46475750)
[»] chr1 (5 HSPs)
chr1 (1-135)||(12990562-12990695)
chr1 (1-135)||(34664825-34664959)
chr1 (31-138)||(9457694-9457798)
chr1 (31-138)||(9461791-9461895)
chr1 (1-135)||(32617559-32617691)
[»] chr8 (6 HSPs)
chr8 (45-170)||(13402173-13402298)
chr8 (52-165)||(13396882-13396995)
chr8 (1-131)||(23489962-23490091)
chr8 (5-90)||(7154302-7154387)
chr8 (72-119)||(14370801-14370848)
chr8 (81-131)||(7154249-7154299)
[»] chr2 (6 HSPs)
chr2 (1-138)||(17988973-17989109)
chr2 (1-134)||(37794641-37794773)
chr2 (16-139)||(5430210-5430333)
chr2 (43-133)||(19263821-19263911)
chr2 (59-131)||(35016316-35016388)
chr2 (93-130)||(20929880-20929917)
[»] chr5 (8 HSPs)
chr5 (1-170)||(39426042-39426211)
chr5 (27-138)||(36491559-36491670)
chr5 (13-149)||(22927036-22927175)
chr5 (15-128)||(41283551-41283664)
chr5 (20-66)||(19967566-19967612)
chr5 (79-119)||(13424644-13424684)
chr5 (42-141)||(20141520-20141620)
chr5 (93-140)||(37247653-37247700)
[»] scaffold0191 (1 HSPs)
scaffold0191 (93-134)||(30867-30908)


Alignment Details
Target: chr7 (Bit Score: 191; Significance: 1e-104; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 25636026 - 25635820
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
25636026 ataaattacataatgttatctccttgtctagtttagaactccaaatctatctttagtttaagttatttacattattatcattatttaagaggtgtgcaat 25635927  T
101 gttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaattgcaaaatcctatacgtgaccgcgaacctgaccgttatttaaaaccttaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
25635926 gttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaatcgcaaaatcctatacgtgaccgcgaacctgacctttatttaaaaccttaac 25635827  T
201 taaaact 207  Q
    |||||||    
25635826 taaaact 25635820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 39653579 - 39653440
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    |||||||||||||||||||||| |  |||||||||||||||||| | ||| | ||||||||||||||||| ||  || ||||||||||||| |||| |||    
39653579 ataaattacataatgttatctctttatctagtttagaactccaactttatatctagtttaagttatttacgttgctatcattatttaagagttgtggaat 39653480  T
101 gttgtgattaattcacaccgcaacaaccgcaatccgtaac 140  Q
     ||||||||||||||||||||||||||| |||||| ||||    
39653479 attgtgattaattcacaccgcaacaaccacaatccataac 39653440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 47363821 - 47363694
Alignment:
5 attacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttg 104  Q
    ||||||||| ||||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||  |||||| ||||||||||||  |||||||||||     
47363821 attacataa-gttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttaagttattatcattatttaagacttgtgcaatgttt 47363723  T
105 tgattaattcacaccgcaacaaccgcaat 133  Q
    |||||||||||||||   |||||||||||    
47363722 tgattaattcacaccaagacaaccgcaat 47363694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 54 - 121
Target Start/End: Complemental strand, 10493439 - 10493372
Alignment:
54 tagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgc 121  Q
    ||||||||||||||||| ||| || ||||||||||||| |||||||||||||||||||||||||||||    
10493439 tagtttaagttatttacgttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgc 10493372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 118
Target Start/End: Original strand, 31742971 - 31743053
Alignment:
37 aactccaaatctatctttagtttaagttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaattcacac 118  Q
    |||| ||||||||||| || |||||||||||||  |||||| |||||||||||||  ||||||||||||||||||||||||||    
31742971 aacttcaaatctatctctaatttaagttatttaagttattatacattatttaagaactgtgcaatgttgtgattaattcacac 31743053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 33049199 - 33049312
Alignment:
27 tctagtttagaactccaaatctatctttagtttaagttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaattcacaccgcaaca 125  Q
    ||||||||| |||| ||||||||||| || || ||||||||||  |||||| |||||||||||||| ||||||||||| ||||||||||||||| | ||     
33049199 tctagttta-aacttcaaatctatctctatttcaagttatttaagttattatacattatttaagagttgtgcaatgttttgattaattcacacctcgacg 33049297  T
126 accgcaatccgtaac 140  Q
    ||| |||||| ||||    
33049298 accacaatccataac 33049312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 49 - 120
Target Start/End: Complemental strand, 7493138 - 7493067
Alignment:
49 atctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccg 120  Q
    |||| |||||||| |||||||| ||| || ||||||||||||| |||| |||||||||||||||||||||||    
7493138 atctctagtttaaattatttacgttactatcattatttaagagttgtgtaatgttgtgattaattcacaccg 7493067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 97 - 149
Target Start/End: Complemental strand, 35451093 - 35451041
Alignment:
97 caatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaat 149  Q
    ||||||||||||||||||||||||||||||  ||||||||||||| |||||||    
35451093 caatgttgtgattaattcacaccgcaacaatggcaatccgtaacaaccgaaat 35451041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10493532 - 10493472
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaa 61  Q
    ||||||||||||||||||||||||  | ||||||||| ||||||||| |||| ||||||||    
10493532 ataaattacataatgttatctccttatatagtttagacctccaaatccatctctagtttaa 10493472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 45435439 - 45435484
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaat 46  Q
    |||||||||||||||||||||| |  |||||||||||||| |||||    
45435439 ataaattacataatgttatctctttatctagtttagaacttcaaat 45435484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 45435550 - 45435591
Alignment:
80 attatttaagaggtgtgcaatgttgtgattaattcacaccgc 121  Q
    |||||||||||| |||||||| |||| |||||||||||||||    
45435550 attatttaagagttgtgcaatattgttattaattcacaccgc 45435591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 6e-39; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 38411991 - 38411858
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||||||||| ||||  |||||||||||||||||||||||||| ||| ||||||||||||||||  || |||| ||||| || ||||||||    
38411991 ataaattacataatgttatttccttatctagtttagaactccaaatctatctctaggttaagttatttacattcctatcattgtttaaaagttgtgcaat 38411892  T
101 gttgtgattaattcacaccgcaacaaccgcaatc 134  Q
    ||||||||||||||||| ||| ||||||||||||    
38411891 gttgtgattaattcacagcgcgacaaccgcaatc 38411858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28147030 - 28147228
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||||||  |||| ||||||| ||||||||| ||  ||||||||||||||||  ||  ||| |||||||||||| ||||||||    
28147030 ataaattacataa-gttatctccttatctaatttagaattccaaatctttccctagtttaagttatttaagttgataatattatttaagagttgtgcaat 28147128  T
101 gttgtgattaattcacaccgcaacaaccgcaatc-----cgtaaca---------gccgaaattgcaaaatcctatacgtgaccgcgaacctgaccgtta 186  Q
    ||||||||||||||||||||| ||||||||| ||     |||||||         |||||||||||||||||||||| |||||||||| | |||||||||    
28147129 gttgtgattaattcacaccgcgacaaccgcactctgtatcgtaacacccgtaatggccgaaattgcaaaatcctatatgtgaccgcgaccgtgaccgtta 28147228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 25968047 - 25968183
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||| ||  |||||||||||||  || |||| ||| ||||||||||||| ||  | | || ||||||||||||| ||||||||    
25968047 ataaattacataa-gttatcttcttatctagtttagaacgtcagatctttctctagtttaagttatgtaagtgactatcattatttaagagttgtgcaat 25968145  T
101 gttgtgattaattcacaccgcaacaaccgcaatccgta 138  Q
    ||||||||||||||||||||| ||||||||||||||||    
25968146 gttgtgattaattcacaccgcgacaaccgcaatccgta 25968183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 55606368 - 55606236
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||| ||||  | |||||||||||||||||||| ||| ||||||||||||||||  ||| || ||||||||||||| ||||||||    
55606368 ataaattacataa-gttatttccttatatagtttagaactccaaatctttctctagtttaagttatttaagttactatcattatttaagagttgtgcaat 55606270  T
101 gttgtgattaattcacaccgcaacaaccgcaatc 134  Q
    |||||||||||||||||  || ||||||| ||||    
55606269 gttgtgattaattcacaatgcgacaaccgtaatc 55606236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 13198202 - 13198064
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||||||  |||| ||||||||||||||||| | | |||||||||||||  |  |||  | |||| |||||||| ||||||||    
13198202 ataaattacataa-gttatctccttatctaatttagaactccaaatctttgtctagtttaagttatcaaagttacgatcattgtttaagagttgtgcaat 13198104  T
101 gttgtgattaattcacaccgcaacaaccgcaatccgtaac 140  Q
    ||||||||||||||||||||| |||| | |||||| ||||    
13198103 gttgtgattaattcacaccgcgacaatcacaatccttaac 13198064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 54 - 140
Target Start/End: Original strand, 11440664 - 11440753
Alignment:
54 tagtttaagttatttacattattaacatta---tttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 140  Q
    ||||||||||||||||||||| || |||||   |||||||| ||  ||||||||||||||||||||||||| |||||  |||||| ||||    
11440664 tagtttaagttatttacattactatcattattatttaagagttgaacaatgttgtgattaattcacaccgcgacaacaacaatccataac 11440753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 29866152 - 29866208
Alignment:
84 tttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 140  Q
    |||||||  ||||||||||||||||||||||||||| | |||||| ||||| |||||    
29866152 tttaagatttgtgcaatgttgtgattaattcacaccacgacaaccacaatctgtaac 29866208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 4e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 9177642 - 9177759
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| ||||| ||||||||    
9177642 ataaattacataatgttatctcac---ctagtttagaactccaaatctatctttagtttaagttatttacgttactatcattattcaagagttgtgcaat 9177738  T
101 gttgtgattaattcacaccgc 121  Q
    |||||||||||||||||||||    
9177739 gttgtgattaattcacaccgc 9177759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 26660726 - 26660602
Alignment:
14 tgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaatt 113  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||| |||||||  ||| ||   | ||||||||| |||||||||||||||||||||    
26660726 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26660627  T
114 cacaccgcaacaaccgcaatccgta 138  Q
    |||||||  ||||||||||| ||||    
26660626 cacaccgtgacaaccgcaattcgta 26660602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 14 - 138
Target Start/End: Complemental strand, 26766697 - 26766573
Alignment:
14 tgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaatt 113  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||| |||||||  ||| ||   | ||||||||| |||||||||||||||||||||    
26766697 tgttatctccttgtatagtttagaactccaaatctttctttagtttaaattatttaagttactattgtgatttaagagttgtgcaatgttgtgattaatt 26766598  T
114 cacaccgcaacaaccgcaatccgta 138  Q
    |||||||  ||||||||||| ||||    
26766597 cacaccgtgacaaccgcaattcgta 26766573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 79; Significance: 4e-37; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 11783529 - 11783353
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    |||||||||| |||||| |||||| ||||||||||||||||||||||||||| | ||||||||| ||||  ||| || ||||||||||||| ||||||||    
11783529 ataaattacacaatgttgtctccttgtctagtttagaactccaaatctatctcttgtttaagttctttatgttactatcattatttaagagttgtgcaat 11783430  T
101 gttgtgattaattcacaccgcaacaaccgcaatccgtaac---agccgaaattgcaaaatcctatacgtgaccgcga 174  Q
    ||||| |||| ||||||  || |||||| |||||||||||   |||| |||| || ||||||||||| |||||||||    
11783429 gttgtaattacttcacaaagcgacaaccacaatccgtaacgcaagccaaaatagcgaaatcctatacttgaccgcga 11783353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 7299155 - 7299267
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||||||||||||||  |||| ||||||| || |||||||||| ||||||||||||||||| ||| || | ||||||||||| ||| ||||    
7299155 ataaattacataatgttatctccttatctactttagaattc-aaatctatctctagtttaagttatttacgttactatcgttatttaagagttgtacaat 7299253  T
101 gttgtgattaattc 114  Q
    |||||| |||||||    
7299254 gttgtggttaattc 7299267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 80 - 119
Target Start/End: Original strand, 53527191 - 53527230
Alignment:
80 attatttaagaggtgtgcaatgttgtgattaattcacacc 119  Q
    ||||||||| || |||||||||||||||||||||||||||    
53527191 attatttaaaagttgtgcaatgttgtgattaattcacacc 53527230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 112
Target Start/End: Original strand, 46475662 - 46475750
Alignment:
27 tctagtttagaactccaaatctatctttagtttaag--ttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaat 112  Q
    ||||||||||| || ||||||||| | || ||||||  ||||||| ||||| | |||||||||||||| | ||||||||||||| ||||    
46475662 tctagtttagagcttcaaatctatttctaatttaagagttatttaaattataatacattatttaagagttttgcaatgttgtgaataat 46475750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 12990562 - 12990695
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    |||||||||||||| |||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||  ||| || ||||||||||||| ||||||||    
12990562 ataaattacataat-ttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttaagttactatcattatttaagagttgtgcaat 12990660  T
101 gttgtgattaattcacaccgcaacaaccgcaatcc 135  Q
    ||||||| ||||||||||||| ||||| |||||||    
12990661 gttgtgactaattcacaccgcgacaactgcaatcc 12990695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 34664825 - 34664959
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||| ||  ||||||||||||||||| |||| ||| ||||||||||||||||| ||| || |||||||||| || ||||||||    
34664825 ataaattacataacgttatcttcttatctagtttagaactccatatctgtctatagtttaagttatttacgttactatcattatttaaaagttgtgcaat 34664924  T
101 gttgtgattaattcacaccgcaacaaccgcaatcc 135  Q
    ||||| ||||||||| ||||  |||||| ||||||    
34664925 gttgtaattaattcataccgtgacaaccacaatcc 34664959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 9457694 - 9457798
Alignment:
31 gtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgc 130  Q
    ||||||||||| ||||||   | ||||||||||||||||  ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
9457694 gtttagaactcaaaatct---tctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgc 9457790  T
131 aatccgta 138  Q
    ||||||||    
9457791 aatccgta 9457798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 31 - 138
Target Start/End: Original strand, 9461791 - 9461895
Alignment:
31 gtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgc 130  Q
    ||||||||||| ||||||   | ||||||||||||||||  ||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
9461791 gtttagaactcaaaatct---tctagtttaagttatttaagttactatcattatttaagagttgtgcaatgttgtgattaattcacaccgcaacaaccgc 9461887  T
131 aatccgta 138  Q
    ||||||||    
9461888 aatccgta 9461895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 32617691 - 32617559
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||||||  ||||||||| ||||| |||  | ||| |||||||||||||| |  ||| || | ||||||||||| ||||||||    
32617691 ataaattacataa-gttatctccttatctagttta-aactctaaagatttctctagtttaagttattcaagttactatcgttatttaagagttgtgcaat 32617594  T
101 gttgtgattaattcacaccgcaacaaccgcaatcc 135  Q
    ||||||||||||| ||||||| |||||||||||||    
32617593 gttgtgattaatttacaccgcgacaaccgcaatcc 32617559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 45 - 170
Target Start/End: Original strand, 13402173 - 13402298
Alignment:
45 atctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagcc 144  Q
    |||||| ||||||||||||||||||| ||| || ||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||     
13402173 atctatttttagtttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgcaatccgtaacagct 13402272  T
145 gaaattgcaaaatcctatacgtgacc 170  Q
    |||||  | ||||| |||||| ||||    
13402273 gaaatcacgaaatcttatacgcgacc 13402298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 52 - 165
Target Start/End: Original strand, 13396882 - 13396995
Alignment:
52 tttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaacagccgaaattg 151  Q
    ||||||||||||||||||| ||| || ||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||| ||||||| ||||| |    
13396882 tttagtttaagttatttaccttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacagccgcaatccataacagctgaaatcg 13396981  T
152 caaaatcctatacg 165  Q
    ||||||| ||||||    
13396982 caaaatcttatacg 13396995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 23490091 - 23489962
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||| ||| ||||||| ||| | ||  ||| || || |||||||||| ||| ||||    
23490091 ataaattacataa-gttatctccttatctagtttagaactccaaatctttctctagtttatgttgtctaagttactatcagtatttaagagttgtacaat 23489993  T
101 gttgtgattaattcacaccgcaacaaccgca 131  Q
    |||||||||||||||||||||||||||||||    
23489992 gttgtgattaattcacaccgcaacaaccgca 23489962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 7154387 - 7154302
Alignment:
5 attacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaaga 90  Q
    ||||||||||  ||||||||  |||  || ||||||| |||||||||| | |||||||||||||||  ||||| ||||||||||||    
7154387 attacataattatatctccttatctgattcagaactcaaaatctatctatggtttaagttatttacggtattatcattatttaaga 7154302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 14370801 - 14370848
Alignment:
72 ttattaacattatttaagaggtgtgcaatgttgtgattaattcacacc 119  Q
    |||||| |||||  |||||| |||||||||||||||||||||||||||    
14370801 ttattatcattaagtaagagttgtgcaatgttgtgattaattcacacc 14370848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 7154299 - 7154249
Alignment:
81 ttatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgca 131  Q
    ||||||||||  ||||||||||||||||||||||||| | | |||||||||    
7154299 ttatttaagacttgtgcaatgttgtgattaattcacatcacgacaaccgca 7154249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 17989109 - 17988973
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    |||||||| ||||| |||||||||  |||||||||||||||||||||| | | ||||||||||||||||  ||| || ||||||||||||| ||||||||    
17989109 ataaattatataat-ttatctccttatctagtttagaactccaaatctttttctagtttaagttatttaagttactatcattatttaagagttgtgcaat 17989011  T
101 gttgtgattaattcacaccgcaacaaccgcaatccgta 138  Q
     |||||||||||||||||| | ||||||||||||||||    
17989010 attgtgattaattcacacctcgacaaccgcaatccgta 17988973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 37794773 - 37794641
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    ||||||||||||| ||||||||||  |||||||||||||||||||||| ||| | || |||||||| ||  ||| || ||||||||||||| ||||||||    
37794773 ataaattacataa-gttatctccttatctagtttagaactccaaatctttctctggtctaagttatctaagttactatcattatttaagagttgtgcaat 37794675  T
101 gttgtgattaattcacaccgcaacaaccgcaatc 134  Q
    ||||||||||||||||||| | ||||||||||||    
37794674 gttgtgattaattcacaccacgacaaccgcaatc 37794641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 5430210 - 5430333
Alignment:
16 ttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattca 115  Q
    |||||||||  |||| ||||||| ||||| ||||||| ||||||||||||||||  ||| || ||||||||||||| |||||||| ||||||||||||||    
5430210 ttatctccttatctactttagaaatccaactctatctctagtttaagttatttatgttactatcattatttaagagttgtgcaatattgtgattaattca 5430309  T
116 caccgcaacaaccgcaatccgtaa 139  Q
    |||||| |||||| ||||| ||||    
5430310 caccgcgacaaccacaatctgtaa 5430333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 43 - 133
Target Start/End: Original strand, 19263821 - 19263911
Alignment:
43 aaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaat 133  Q
    |||||||||| |||| |||||||||||  ||| || ||||||||||||  ||||||||||||||||||||||||| |||||||||||||||    
19263821 aaatctatctctagtataagttatttatgttactatcattatttaagaattgtgcaatgttgtgattaattcacagcgcaacaaccgcaat 19263911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 131
Target Start/End: Complemental strand, 35016388 - 35016316
Alignment:
59 taagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgca 131  Q
    |||||||||||  ||| || ||||||||||||| |||| |||||||||||||||||||||||| |||||||||    
35016388 taagttatttaagttactatcattatttaagagttgtgtaatgttgtgattaattcacaccgcgacaaccgca 35016316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 20929880 - 20929917
Alignment:
93 tgtgcaatgttgtgattaattcacaccgcaacaaccgc 130  Q
    |||||| |||||||||||||||||||||| ||||||||    
20929880 tgtgcattgttgtgattaattcacaccgcgacaaccgc 20929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 5e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 39426211 - 39426042
Alignment:
1 ataaattacataatgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaat 100  Q
    |||||||||||||||| |||||||  | |||||||||| ||||||| ||||| || |||||||||||||||||| || || ||| || ||| ||||||||    
39426211 ataaattacataatgtcatctccttatatagtttagaa-tccaaatatatctata-tttaagttatttacattactatcaatatgtatgagttgtgcaat 39426114  T
101 gttgtgattaattcacaccgcaacaaccgcaa--tccgtaacagccgaaattgcaaaatcctatacgtgacc 170  Q
    ||||| ||||||||||||||| |||||  |||  |||||||||| |||||| |  |||| ||||||| ||||    
39426113 gttgtaattaattcacaccgcgacaactacaacgtccgtaacagtcgaaatcgtcaaattctatacgcgacc 39426042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 36491559 - 36491670
Alignment:
27 tctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaa 126  Q
    ||||||||||||||| |||||||||| ||||||| ||||||||| ||| || ||| ||||||||  | ||||||||| ||||||||||||||||  ||||    
36491559 tctagtttagaactcaaaatctatctctagtttatgttatttactttactatcatcatttaagaattttgcaatgttatgattaattcacaccgtgacaa 36491658  T
127 ccgcaatccgta 138  Q
    ||| ||||||||    
36491659 ccgtaatccgta 36491670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 149
Target Start/End: Complemental strand, 22927175 - 22927036
Alignment:
13 atgttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaat 112  Q
    |||||||||| | ||||||||||||||  | ||||||||| ||||||||||||||||  ||| |  ||||||||||||| || |||||||||||||||||    
22927175 atgttatctcattgtctagtttagaacctcgaatctatctctagtttaagttatttatgttactttcattatttaagagttgggcaatgttgtgattaat 22927076  T
113 tcacaccg---caacaaccgcaatccgtaacagccgaaat 149  Q
    ||||  ||   ||||||| |||||||| |||| |||||||    
22927075 tcacgtcgcgacaacaacagcaatccgcaacaaccgaaat 22927036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 15 - 128
Target Start/End: Original strand, 41283551 - 41283664
Alignment:
15 gttatctcctagtctagtttagaactccaaatctatctttagtttaagttatttacattattaacattatttaagaggtgtgcaatgttgtgattaattc 114  Q
    ||||||||||  |||||||||||||| ||||||| ||| ||||||||||||||||  ||| || | ||||| || || ||||||||||||||||||||||    
41283551 gttatctccttatctagtttagaacttcaaatctttctctagtttaagttatttatgttactatctttattcaaaagttgtgcaatgttgtgattaattc 41283650  T
115 acaccgcaacaacc 128  Q
    ||||| | ||||||    
41283651 acaccacgacaacc 41283664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 19967566 - 19967612
Alignment:
20 ctcctagtctagtttagaactccaaatctatctttagtttaagttat 66  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||    
19967566 ctccttgtctagtttagaactccaaatctttctttagtttaagttat 19967612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 119
Target Start/End: Complemental strand, 13424684 - 13424644
Alignment:
79 cattatttaagaggtgtgcaatgttgtgattaattcacacc 119  Q
    ||||||||||||| |||||||||||||||||||||||||||    
13424684 cattatttaagagttgtgcaatgttgtgattaattcacacc 13424644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 141
Target Start/End: Complemental strand, 20141620 - 20141520
Alignment:
42 caaatctatctttagtttaagttatttacattatta-acattatttaagaggtgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 140  Q
    ||||||||||| || |||||||| ||||  |||||| ||||||||||||||  ||||  ||||||||||||||||||||   |||| |||||||| ||||    
20141620 caaatctatctctaatttaagttgtttaagttattatacattatttaagagtagtgcgttgttgtgattaattcacaccatgacaatcgcaatccataac 20141521  T
141 a 141  Q
    |    
20141520 a 20141520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 37247653 - 37247700
Alignment:
93 tgtgcaatgttgtgattaattcacaccgcaacaaccgcaatccgtaac 140  Q
    |||||| |||||||||||||||||||||| |||||| ||||| |||||    
37247653 tgtgcattgttgtgattaattcacaccgcgacaaccacaatctgtaac 37247700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 93 - 134
Target Start/End: Original strand, 30867 - 30908
Alignment:
93 tgtgcaatgttgtgattaattcacaccgcaacaaccgcaatc 134  Q
    |||||| ||||||||||||||||||| ||||||||| |||||    
30867 tgtgcattgttgtgattaattcacactgcaacaaccacaatc 30908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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