View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_low_4 (Length: 633)

Name: NF2013_low_4
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_low_4
NF2013_low_4
[»] chr6 (3 HSPs)
chr6 (12-619)||(31974074-31974704)
chr6 (360-454)||(28973924-28974018)
chr6 (573-624)||(31978180-31978231)
[»] chr3 (2 HSPs)
chr3 (196-492)||(20488011-20488324)
chr3 (341-455)||(12881038-12881154)
[»] chr8 (5 HSPs)
chr8 (316-510)||(12521267-12521456)
chr8 (202-313)||(12521137-12521247)
chr8 (393-455)||(33168353-33168415)
chr8 (393-438)||(17315363-17315408)
chr8 (393-438)||(17337274-17337319)
[»] chr1 (2 HSPs)
chr1 (357-451)||(37627430-37627524)
chr1 (392-492)||(15918055-15918154)
[»] chr7 (1 HSPs)
chr7 (341-493)||(10234630-10234784)
[»] chr5 (1 HSPs)
chr5 (344-512)||(16766449-16766618)
[»] chr2 (3 HSPs)
chr2 (393-455)||(24185325-24185387)
chr2 (344-458)||(31603507-31603621)
chr2 (317-355)||(41700297-41700335)
[»] chr4 (1 HSPs)
chr4 (396-491)||(31371696-31371790)


Alignment Details
Target: chr6 (Bit Score: 431; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 12 - 619
Target Start/End: Complemental strand, 31974704 - 31974074
Alignment:
Q  12 tttgacaacccctatgttgaattggattaagtgtaatatagatggtgtcgcatctggtactccacctataactgcttttgaatgtattttcaggaacaac 111  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||| ||||||||| ||||||||     
T  31974704 tttgacaactcctatgttgaattggattaagtgtaatatagatggtgtcgcaccttgtactccacctataactacttttgcatgtatttttaggaacaat 31974605  T
Q  112 gaatctcactctttaggttgcattgcaggtattttctatggttctaggctataaatatacctcgtttatgaggcattgggacatctttagacttgtaaac 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |    
T  31974604 gaatctcactctttaggttgcattgcaggtattttctatggttctaggctataaatattcctcatttatgaggcattgggacatctttagacttgtaatc 31974505  T
Q  212 tcactgcaaagttgaatacaagttcttgatgttttcttaagcttttcttctttatttgcattcctttgcttccttgtctctattttatgttctttaca-- 309  Q
      ||| ||||||||||  |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31974504 ctactccaaagttgaaatcaagttgttgaagttttcttaagcttttcttctttatttgcattcctttgcttccttgtctctattttatgttctttacaat 31974405  T
Q  310 --------------tttcagctctttatcgctttgttttcattctgtcatttacttttatatcatttacttttatgtcttcatcttctactccctcatct 395  Q
                  |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||    
T  31974404 ttcagtactttacatttcagttctttatcgctttgttttcattctgtcatttacttttatatcatttacttttatgtcttcatcttctgttacctcatct 31974305  T
Q  396 actatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatgatggacccttaaacaatctcaagtctagactctattttatta 495  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  31974304 actatgatcatgtatgagtagacttttctagtcctgggattgtgggaattatctaatgatggacccttaaacaatctcaagtctagactctcttttatta 31974205  T
Q  496 tagttcctattctaatccaagctcaaagcataaagggtat--aggtttaggtttcaggcacttatttcactttaatttg-----gctaaggaagaaatgt 588  Q
    || ||||||||||||| ||||||||||||| |||||||||  |||||| ||||||||||||||||||||||||||||||     ||||||||||||||||    
T  31974204 tatttcctattctaattcaagctcaaagcagaaagggtatggaggtttgggtttcaggcacttatttcactttaatttggctatgctaaggaagaaatgt 31974105  T
Q  589 ttaaaattgttaaccaactaagatactattg 619  Q
    || ||||||||||||||||||||||||||||    
T  31974104 ttgaaattgttaaccaactaagatactattg 31974074  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 360 - 454
Target Start/End: Original strand, 28973924 - 28974018
Alignment:
Q  360 tttacttttatgtcttcatcttctactccctcatctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatga 454  Q
    |||||||| ||||||| || || || |||||  ||||||||||| |||| ||| | |||||||||| ||| |||||||| ||||| |||||||||    
T  28973924 tttactttcatgtctttatattttaatcccttttctactatgattatgtgtgaatggacttttctaatctcgagattgttggaataatctaatga 28974018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 573 - 624
Target Start/End: Complemental strand, 31978231 - 31978180
Alignment:
Q  573 gctaaggaagaaatgtttaaaattgttaaccaactaagatactattgatgat 624  Q
    |||| ||||| ||||||| ||||||||||||||| |||||||||||| ||||    
T  31978231 gctatggaagcaatgtttgaaattgttaaccaaccaagatactattgttgat 31978180  T

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Target: chr3 (Bit Score: 105; Significance: 4e-52; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 196 - 492
Target Start/End: Complemental strand, 20488324 - 20488011
Alignment:
Q  196 ctttagacttgtaaactcactgcaaagttgaatacaagttcttgatgttttcttaagcttttcttctttatttgcattcctttgcttccttgtctctatt 295  Q
    |||||||||||||| |||||| ||||||||||| ||||||||||   ||||||||||||||| ||||||||||||||||  || ||| ||||| | ||||    
T  20488324 ctttagacttgtaatctcactccaaagttgaattcaagttcttgcaattttcttaagcttttgttctttatttgcattcagttacttacttgtatgtatt 20488225  T
Q  296 ttatgttcttt----------------acatttcagctctttatcgctttgttttcattctgtcatttacttttatatcatttacttttatg-tcttcat 378  Q
     | ||||||||                ||||||||| ||| ||| |||||| |||||||| | |||||||||||||||||| |||||||||| ||||| |    
T  20488224 ctctgttctttgcatttctagtactttacatttcagttctctattgctttgatttcattccgccatttacttttatatcatatacttttatggtcttcgt 20488125  T
Q  379 cttctactccctcatctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatgatggacccttaaacaatctcaagtc 478  Q
    ||| || |||||| |||||||||||||| ||||| ||||||| ||||||||||  ||| ||| ||||||||||||||||||||  |||||||| ||| ||    
T  20488124 cttttagtccctcgtctactatgatcatatatgaatagacttctctagtcttggtattttggaaattatctaatgatggacccccaaacaatcccaattc 20488025  T
Q  479 tagactctatttta 492  Q
    ||||||||||||||    
T  20488024 tagactctatttta 20488011  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 341 - 455
Target Start/End: Original strand, 12881038 - 12881154
Alignment:
Q  341 gtcatttacttttatatcatttacttttatgtcttcatct--tctactccctcatctactatgatcatgtatgagtagacttttctagtcttgagattgt 438  Q
    |||||||||||||||  | |||||||| ||||||| || |  | || |||||  |||||||||||||||  |||||||||||||||  ||||| ||||||    
T  12881038 gtcatttacttttatgccttttactttcatgtctttatatattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattgt 12881137  T
Q  439 gggaattatctaatgat 455  Q
     ||||| || |||||||    
T  12881138 aggaataatttaatgat 12881154  T

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Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 316 - 510
Target Start/End: Original strand, 12521267 - 12521456
Alignment:
Q  316 ctctttatcgctttgttttcattctgtcatttacttttatatcatttacttttatgtcttcatcttctactccctcatctactatgatcatgtatgagta 415  Q
    |||||||||||||||||||| |||  |||||||||||||| ||||||||||| ||||||| ||||| || ||| |  | || ||||||||||| |||||     
T  12521267 ctctttatcgctttgttttcgttccttcatttacttttatgtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtg 12521366  T
Q  416 gacttttctagtcttgagattgtgggaattatctaatgatggacccttaaacaatctcaagtctagactctattttattatagttcctattctaa 510  Q
    ||||||||    || | | |||| ||||| || ||||||||||  | ||| ||||| |||||||||| |||||||||||  |||| |||||||||    
T  12521367 gacttttc----ctagtg-ttgttggaataatttaatgatggagtcctaatcaatcccaagtctagaatctattttatttgagtttctattctaa 12521456  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 202 - 313
Target Start/End: Original strand, 12521137 - 12521247
Alignment:
Q  202 acttgtaaactcactgcaaagttgaatacaagttcttgatgttttcttaagcttttcttctttatttgcattcctttgcttccttgtctctattttatgt 301  Q
    |||||||| || ||| ||||||||||  ||||||| | || |||| ||||| |||| ||||||||||||||| || | ||| |||| || |||||| |||    
T  12521137 acttgtaatcttactccaaagttgaaatcaagttcct-atatttttttaagtttttgttctttatttgcatttctgtactttcttgcctttattttttgt 12521235  T
Q  302 tctttacatttc 313  Q
    ||||||||||||    
T  12521236 tctttacatttc 12521247  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 33168415 - 33168353
Alignment:
Q  393 tctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatgat 455  Q
    ||||||||||||||   |||||| ||||||||||||| | |||||| ||||| ||||||||||    
T  33168415 tctactatgatcattagtgagtaaacttttctagtctcgtgattgttggaataatctaatgat 33168353  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 17315408 - 17315363
Alignment:
Q  393 tctactatgatcatgtatgagtagacttttctagtcttgagattgt 438  Q
    |||||||||||||||  |||||| ||| ||||||||||||||||||    
T  17315408 tctactatgatcatgagtgagtaaactattctagtcttgagattgt 17315363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 17337319 - 17337274
Alignment:
Q  393 tctactatgatcatgtatgagtagacttttctagtcttgagattgt 438  Q
    |||||||||||||||  |||||| ||| ||||||||||||||||||    
T  17337319 tctactatgatcatgagtgagtaaactattctagtcttgagattgt 17337274  T

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Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 37627430 - 37627524
Alignment:
Q  357 tcatttacttttatgtcttcatcttctactccctcatctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaa 451  Q
    ||||||||||| ||||||| ||||| || || ||  |||||||||||||||| ||||||||| ||||||||||| ||||||| ||||| ||||||    
T  37627430 tcatttactttcatgtctttatcttttaatctcttgtctactatgatcatgtgtgagtagacatttctagtcttaagattgttggaataatctaa 37627524  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 392 - 492
Target Start/End: Original strand, 15918055 - 15918154
Alignment:
Q  392 atctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatgatggacccttaaacaatctcaagtctagactctatttt 491  Q
    ||||||||||||| ||  |||||||||||| || || ||| |||||| ||||| |||||||||| ||  | ||| ||| ||||||||||||| |||||||    
T  15918055 atctactatgatcttgattgagtagactttccttgtattgggattgttggaataatctaatgattgaatcctaatcaa-ctcaagtctagaccctatttt 15918153  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 341 - 493
Target Start/End: Original strand, 10234630 - 10234784
Alignment:
Q  341 gtcatttacttttatatcatttacttttatgtcttcatcttctactccctcatctact--atgatcatgtatgagtagacttttctagtcttgagattgt 438  Q
    ||||||||||||||| ||||||||||| |||  || || ||||| |||||  ||||||  || ||||||||||||||||| ||| |||||||| ||||||    
T  10234630 gtcatttacttttatgtcatttactttcatgcatttattttctaatcccttgtctactctataatcatgtatgagtagacctttttagtcttgtgattgt 10234729  T
Q  439 gggaattatctaatgatggacccttaaacaatctcaagtctagactctattttat 493  Q
     | ||| |||||||||| ||  | |||  || | |||||||| ||||||||||||    
T  10234730 tgaaataatctaatgattgaatcctaatgaaacccaagtctaaactctattttat 10234784  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 344 - 512
Target Start/End: Complemental strand, 16766618 - 16766449
Alignment:
Q  344 atttacttttatatcatttacttttatgtcttcatcttctactccctcatctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaa 443  Q
    |||| ||||| |||||||||| ||||||||||||| || || ||  |  |||||||||||||||| ||||||||| | | || |||||  ||||||||||    
T  16766618 atttgcttttctatcatttacctttatgtcttcatgttttaatcttttgtctactatgatcatgtgtgagtagacatatttaatcttggtattgtgggaa 16766519  T
Q  444 ttatctaatga-tggacccttaaacaatctcaagtctagactctattttattatagttcctattctaatc 512  Q
    | || |||||| | || || || ||| | ||||| ||||| |||||||||||| ||||| |||| |||||    
T  16766518 taatttaatgatttgatccctagacattgtcaagcctagattctattttattaaagttcttattttaatc 16766449  T

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Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 393 - 455
Target Start/End: Complemental strand, 24185387 - 24185325
Alignment:
Q  393 tctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatgat 455  Q
    ||||||||||||||   ||||||||||||||||||||||||||||  ||||| ||||||||||    
T  24185387 tctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgat 24185325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 344 - 458
Target Start/End: Complemental strand, 31603621 - 31603507
Alignment:
Q  344 atttacttttatatcatttacttttatgtcttcatcttctactccctcatctactatgatcatgtatgagtagacttttctagtcttgagattgtgggaa 443  Q
    |||||||||||| |||||||  ||| |||||||||||| ||     |  |||||||||||||| | |||||||| |||||||||||||  |||||   ||    
T  31603621 atttacttttatgtcatttatctttgtgtcttcatcttttaagtttttgtctactatgatcatatgtgagtagatttttctagtcttggaattgttaaaa 31603522  T
Q  444 ttatctaatgatgga 458  Q
    | |||||||||||||    
T  31603521 taatctaatgatgga 31603507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 317 - 355
Target Start/End: Complemental strand, 41700335 - 41700297
Alignment:
Q  317 tctttatcgctttgttttcattctgtcatttacttttat 355  Q
    |||||||||||||||||||||||  ||||||||||||||    
T  41700335 tctttatcgctttgttttcattccttcatttacttttat 41700297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 396 - 491
Target Start/End: Complemental strand, 31371790 - 31371696
Alignment:
Q  396 actatgatcatgtatgagtagacttttctagtcttgagattgtgggaattatctaatgatggacccttaaacaatctcaagtctagactctatttt 491  Q
    ||||||||||||| |||||||||| | |||||||||||| ||| | ||| |||||||||| || || ||| |||   |||||||| ||||||||||    
T  31371790 actatgatcatgtgtgagtagactct-ctagtcttgagaatgttgaaataatctaatgattgaaccctaatcaacgccaagtctaaactctatttt 31371696  T

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