View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2013_low_7 (Length: 464)

Name: NF2013_low_7
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2013_low_7
NF2013_low_7
[»] chr7 (13 HSPs)
chr7 (31-364)||(21551391-21551724)
chr7 (379-451)||(21551709-21551781)
chr7 (409-446)||(23172406-23172443)
chr7 (403-439)||(31037668-31037704)
chr7 (403-452)||(24614695-24614744)
chr7 (403-440)||(46418555-46418592)
chr7 (403-439)||(1285094-1285130)
chr7 (403-439)||(4098644-4098680)
chr7 (403-439)||(9819574-9819610)
chr7 (403-439)||(10721499-10721535)
chr7 (403-439)||(29461846-29461882)
chr7 (403-439)||(36032932-36032968)
chr7 (404-452)||(40187648-40187696)
[»] chr2 (2 HSPs)
chr2 (393-439)||(41555284-41555330)
chr2 (406-439)||(39733676-39733709)
[»] chr8 (6 HSPs)
chr8 (405-446)||(1230679-1230720)
chr8 (403-439)||(27134445-27134481)
chr8 (403-446)||(36919311-36919354)
chr8 (413-446)||(36588112-36588145)
chr8 (403-439)||(4600303-4600339)
chr8 (403-439)||(7553679-7553715)
[»] chr1 (8 HSPs)
chr1 (403-447)||(41573286-41573330)
chr1 (403-446)||(3573342-3573385)
chr1 (403-446)||(44243873-44243916)
chr1 (403-446)||(44365966-44366009)
chr1 (403-449)||(3431330-3431376)
chr1 (404-438)||(40043183-40043217)
chr1 (403-439)||(1854269-1854305)
chr1 (403-439)||(33229707-33229743)
[»] chr5 (5 HSPs)
chr5 (403-450)||(36648915-36648962)
chr5 (404-447)||(40955512-40955555)
chr5 (403-431)||(18020667-18020695)
chr5 (403-439)||(18278284-18278320)
chr5 (403-439)||(39917909-39917945)
[»] chr4 (10 HSPs)
chr4 (403-445)||(13984661-13984703)
chr4 (403-445)||(23171011-23171053)
chr4 (397-451)||(44195317-44195371)
chr4 (397-439)||(55430590-55430632)
chr4 (403-440)||(18458752-18458789)
chr4 (403-452)||(22164281-22164330)
chr4 (403-452)||(23626381-23626430)
chr4 (403-439)||(30380530-30380566)
chr4 (402-446)||(34595954-34595998)
chr4 (403-439)||(48067133-48067169)
[»] chr3 (7 HSPs)
chr3 (401-439)||(6901479-6901517)
chr3 (401-439)||(37243222-37243260)
chr3 (403-452)||(1757681-1757730)
chr3 (403-439)||(27397637-27397673)
chr3 (404-452)||(36431810-36431858)
chr3 (403-439)||(45669643-45669679)
chr3 (403-439)||(48517671-48517707)
[»] scaffold0012 (1 HSPs)
scaffold0012 (404-445)||(122550-122591)
[»] scaffold0122 (1 HSPs)
scaffold0122 (403-439)||(14211-14247)
[»] scaffold0045 (2 HSPs)
scaffold0045 (403-439)||(63862-63898)
scaffold0045 (403-439)||(71194-71230)
[»] chr6 (2 HSPs)
chr6 (403-439)||(5632134-5632170)
chr6 (403-439)||(14215478-14215514)


Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 31 - 364
Target Start/End: Original strand, 21551391 - 21551724
Alignment:
Q  31 tttattttttgctcttttggttcttaaactgctttactaagcatacaagaatatatctaatccaatatgcaagaaaacttttaagttttaatcatttctc 130  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  21551391 tttatttttagctcttttggttcttaaactgctttactaagcatacaagaatatatctaatccaatatgcaagaaaacttttaagttttaaccatttttc 21551490  T
Q  131 taatataattaaagacaaatgtgtgttgcttgttacgtacatgatgctagatatatgaacttttaccaaactgatgtggtccaaatggtccaaagactag 230  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21551491 taatataattaaagacaaatatgtgttgcttgttacgtacatgatgctagatatatgaacttttaccaaactggtgtggtccaaatggtccaaagactag 21551590  T
Q  231 atatatgaacgtaagttcttgtcttttaaatatgtgatcacgagtttattttctatagttcatgtctatgtaattcaccatttgaatttctcaagattcc 330  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21551591 atatatgaacgtaagttcttgtcttttaaatatgtgatcacgagtttattttctatagttcatgtctatgtaattcaccatttgaatttctcaagattcc 21551690  T
Q  331 taaattattagtcatgttaaacaaatatttatat 364  Q
    ||||| ||||||||||||||||||||||||||||    
T  21551691 taaatgattagtcatgttaaacaaatatttatat 21551724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 379 - 451
Target Start/End: Original strand, 21551709 - 21551781
Alignment:
Q  379 aaacaaatatttatatttgttatagtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtct 451  Q
    ||||||||||||||||||| || ||||||||||||| |||||||||  |||||||||||||||||||| ||||    
T  21551709 aaacaaatatttatatttgctacagtgagtttaactaagttggtagagacaatgtataataaatgtaaagtct 21551781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 409 - 446
Target Start/End: Original strand, 23172406 - 23172443
Alignment:
Q  409 ttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  23172406 ttaactcagttggtaggaacaatgtataatatatgtaa 23172443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 31037704 - 31037668
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31037704 gtgagtttaactcagttggtaggaacaatgcataata 31037668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 24614695 - 24614744
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtctg 452  Q
    |||||||||||||||||| |||||| |||| |||||| || |||||||||    
T  24614695 gtgagtttaactcagttgataggaataatgcataatatatataatgtctg 24614744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Complemental strand, 46418592 - 46418555
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataa 440  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  46418592 gtgagcttaactcagttggtaagaacaatgtataataa 46418555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 1285130 - 1285094
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  1285130 gtgagtttaactcagttgataggaacaatgcataata 1285094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 4098680 - 4098644
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  4098680 gtgagtttagctcagttggtaggaacaatatataata 4098644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 9819610 - 9819574
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  9819610 gtgagtttatctcagttggtaggaacaatgcataata 9819574  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 10721535 - 10721499
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  10721535 gtgagtttatctcagttggtaggaacaatgcataata 10721499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 29461882 - 29461846
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  29461882 gtgagtttaactcagttggtagggacaatgcataata 29461846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 36032932 - 36032968
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  36032932 gtgagtttaactcggttggtagtaacaatgtataata 36032968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 452
Target Start/End: Complemental strand, 40187696 - 40187648
Alignment:
Q  404 tgagtttaactcagttggtaggaacaatgtataataaatgtaatgtctg 452  Q
    |||| ||||||||||||||||| |||||| |||||| |||||| |||||    
T  40187696 tgagcttaactcagttggtagggacaatgcataatatatgtaaggtctg 40187648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 439
Target Start/End: Original strand, 41555284 - 41555330
Alignment:
Q  393 atttgttatagtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||| | |||||||||||||||||||||||||||||| ||||||    
T  41555284 atttgttctcgtgagtttaactcagttggtaggaacaatgcataata 41555330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 439
Target Start/End: Complemental strand, 39733709 - 39733676
Alignment:
Q  406 agtttaactcagttggtaggaacaatgtataata 439  Q
    |||||||||||||||||||||||| |||||||||    
T  39733709 agtttaactcagttggtaggaacattgtataata 39733676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 405 - 446
Target Start/End: Complemental strand, 1230720 - 1230679
Alignment:
Q  405 gagtttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    |||||||||||||||||||||||||||| |||||| ||||||    
T  1230720 gagtttaactcagttggtaggaacaatgcataatatatgtaa 1230679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 27134481 - 27134445
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| |||||||||||||||    
T  27134481 gtgagtttaactcagttggtatgaacaatgtataata 27134445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 36919311 - 36919354
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    ||||| ||||||||||||||| ||||||||||||||| ||||||    
T  36919311 gtgagcttaactcagttggtaagaacaatgtataatatatgtaa 36919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 446
Target Start/End: Complemental strand, 36588145 - 36588112
Alignment:
Q  413 ctcagttggtaggaacaatgtataataaatgtaa 446  Q
    ||||||||||||||||||||||||||| ||||||    
T  36588145 ctcagttggtaggaacaatgtataatatatgtaa 36588112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 4600339 - 4600303
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  4600339 gtgagtttagctcagttggtagggacaatgtataata 4600303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 7553679 - 7553715
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||||| |||||| ||||||    
T  7553679 gtgagtttaactcagttggtagggacaatgcataata 7553715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 403 - 447
Target Start/End: Complemental strand, 41573330 - 41573286
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaat 447  Q
    ||||||||||||||||||||||| |||||| |||||| |||||||    
T  41573330 gtgagtttaactcagttggtagggacaatgcataatatatgtaat 41573286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 3573385 - 3573342
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    ||||| |||||||||||||||||||||||| |||||| ||||||    
T  3573385 gtgagcttaactcagttggtaggaacaatgcataatatatgtaa 3573342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Original strand, 44243873 - 44243916
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    ||||||||| |||||||||||||||||||| |||||| ||||||    
T  44243873 gtgagtttagctcagttggtaggaacaatgcataatatatgtaa 44243916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 446
Target Start/End: Complemental strand, 44366009 - 44365966
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    |||||||||||||||||||||||||||||  |||||| ||||||    
T  44366009 gtgagtttaactcagttggtaggaacaatacataatatatgtaa 44365966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 449
Target Start/End: Original strand, 3431330 - 3431376
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaatgt 449  Q
    ||||||||||||||||||||||||| |||| |||||| ||| |||||    
T  3431330 gtgagtttaactcagttggtaggaagaatgcataatatatgcaatgt 3431376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 404 - 438
Target Start/End: Complemental strand, 40043217 - 40043183
Alignment:
Q  404 tgagtttaactcagttggtaggaacaatgtataat 438  Q
    |||||||||||||||||||||| ||||||||||||    
T  40043217 tgagtttaactcagttggtagggacaatgtataat 40043183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 1854269 - 1854305
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  1854269 gtgagtttaactcagttggtaggaataatgcataata 1854305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 33229743 - 33229707
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  33229743 gtgagcttaactcagttggtaggaacaatgcataata 33229707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Original strand, 36648915 - 36648962
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtc 450  Q
    ||||||||||||||||| ||| ||||||||||||||| ||| ||||||    
T  36648915 gtgagtttaactcagtttgtatgaacaatgtataatatatgcaatgtc 36648962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 447
Target Start/End: Complemental strand, 40955555 - 40955512
Alignment:
Q  404 tgagtttaactcagttggtaggaacaatgtataataaatgtaat 447  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||    
T  40955555 tgagtttagctcagttagtaggaacaatgtataatatatgtaat 40955512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 431
Target Start/End: Complemental strand, 18020695 - 18020667
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaat 431  Q
    |||||||||||||||||||||||||||||    
T  18020695 gtgagtttaactcagttggtaggaacaat 18020667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 18278320 - 18278284
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  18278320 gtgagtttaactcagttggtaagaacaatgcataata 18278284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 39917945 - 39917909
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  39917945 gtgagtttaactcagttggtaagaacaatgcataata 39917909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Complemental strand, 13984703 - 13984661
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgta 445  Q
    ||||| |||||||||||||||||||||||| |||||| |||||    
T  13984703 gtgagcttaactcagttggtaggaacaatgcataatatatgta 13984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 403 - 445
Target Start/End: Original strand, 23171011 - 23171053
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgta 445  Q
    ||||| |||||||||||| |||||||||||||||||| |||||    
T  23171011 gtgagcttaactcagttgttaggaacaatgtataatatatgta 23171053  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 451
Target Start/End: Complemental strand, 44195371 - 44195317
Alignment:
Q  397 gttatagtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtct 451  Q
    ||||| ||||||||||||||||||||||||| |||  |||||| |||||| ||||    
T  44195371 gttatcgtgagtttaactcagttggtaggaataatacataatatatgtaaagtct 44195317  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 439
Target Start/End: Original strand, 55430590 - 55430632
Alignment:
Q  397 gttatagtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||| ||||||||||||||||||||||||| |||| ||||||    
T  55430590 gttatcgtgagtttaactcagttggtaggaataatgcataata 55430632  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 440
Target Start/End: Original strand, 18458752 - 18458789
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataa 440  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  18458752 gtgagtttaactcagttggtagaaacaatgcataataa 18458789  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 22164330 - 22164281
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtctg 452  Q
    ||||||||| || ||||||||||||||||| |||||| |||||| |||||    
T  22164330 gtgagtttagcttagttggtaggaacaatgcataatatatgtaaggtctg 22164281  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Original strand, 23626381 - 23626430
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtctg 452  Q
    |||||||||||||||||||||   ||||||||||||| || |||||||||    
T  23626381 gtgagtttaactcagttggtatagacaatgtataatatatataatgtctg 23626430  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 30380530 - 30380566
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| | |||||||||||||    
T  30380530 gtgagtttaactcagttggtaaggacaatgtataata 30380566  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 402 - 446
Target Start/End: Complemental strand, 34595998 - 34595954
Alignment:
Q  402 agtgagtttaactcagttggtaggaacaatgtataataaatgtaa 446  Q
    |||||||||||||||||||||| | |||||| |||||| ||||||    
T  34595998 agtgagtttaactcagttggtaaggacaatgcataatatatgtaa 34595954  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 48067133 - 48067169
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  48067133 gtgagttaaactcagttggtagggacaatgtataata 48067169  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Complemental strand, 6901517 - 6901479
Alignment:
Q  401 tagtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  6901517 tagtgagcttagctcagttggtaggaacaatgtataata 6901479  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 401 - 439
Target Start/End: Original strand, 37243222 - 37243260
Alignment:
Q  401 tagtgagtttaactcagttggtaggaacaatgtataata 439  Q
    |||||||||||||||| ||||||||||||||| ||||||    
T  37243222 tagtgagtttaactcaattggtaggaacaatgaataata 37243260  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 452
Target Start/End: Complemental strand, 1757730 - 1757681
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataataaatgtaatgtctg 452  Q
    ||||| |||||||||||||||||||||||| |||||| ||| || |||||    
T  1757730 gtgagcttaactcagttggtaggaacaatgcataatatatgcaacgtctg 1757681  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 27397673 - 27397637
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| | |||||||||||||    
T  27397673 gtgagtttaactcagttggtatggacaatgtataata 27397637  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 404 - 452
Target Start/End: Original strand, 36431810 - 36431858
Alignment:
Q  404 tgagtttaactcagttggtaggaacaatgtataataaatgtaatgtctg 452  Q
    |||||||| ||||||||||||| | ||||||||||| ||| ||||||||    
T  36431810 tgagtttagctcagttggtagggataatgtataatatatgcaatgtctg 36431858  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 45669679 - 45669643
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    |||||||||||||| ||||||| ||||||||||||||    
T  45669679 gtgagtttaactcaattggtagaaacaatgtataata 45669643  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 48517671 - 48517707
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  48517671 gtgagtttaactcagttgataggaacaatgcataata 48517707  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 445
Target Start/End: Original strand, 122550 - 122591
Alignment:
Q  404 tgagtttaactcagttggtaggaacaatgtataataaatgta 445  Q
    ||||||||||| |||||||||||||| ||||||||| |||||    
T  122550 tgagtttaacttagttggtaggaacattgtataatatatgta 122591  T

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Target: scaffold0122 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 14247 - 14211
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| |||||||| ||||||    
T  14247 gtgagtttaactcagttggtatgaacaatgcataata 14211  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 63862 - 63898
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  63862 gtgagtttagctcagttggtagggacaatgtataata 63898  T

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Target: scaffold0045; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 71194 - 71230
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  71194 gtgagtttagctcagttggtagggacaatgtataata 71230  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Original strand, 5632134 - 5632170
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  5632134 gtgagcttaactcaattggtaggaacaatgtataata 5632170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 403 - 439
Target Start/End: Complemental strand, 14215514 - 14215478
Alignment:
Q  403 gtgagtttaactcagttggtaggaacaatgtataata 439  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  14215514 gtgagtttaactcagttggtatgaacaatgtttaata 14215478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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