View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2013_low_9 (Length: 438)
Name: NF2013_low_9
Description: NF2013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2013_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 44627290 - 44626859
Alignment:
| Q |
1 |
attcaggatcccctataaacacatggattggtttctcatttgtgaatggtttaattataagtggaaaagggactgttgatggtcgaggctctatgtggtg |
100 |
Q |
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| T |
44627290 |
attcaggatcccctataaacacatggattggtttctcatttgtgaatggtttaattataagtggaaaagggactgttgatggtcgaggctctatgtggtg |
44627191 |
T |
|
| Q |
101 |
gaaacaaccttgcataggaaatccaccacccgtaagtactatagnnnnnnnnaacttaataacatttcaacttgtgttacttaaataatacactatatat |
200 |
Q |
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| T |
44627190 |
gaaacaaccttgcataggaaatccaccacccgtaagtactatag-tttttttaacttaataacatttcaacttttgttacttaaataatacactatatat |
44627092 |
T |
|
| Q |
201 |
actttttatagta----atatatacttgcatcatttttatgannnnnnnncttccctttttcaggggacaagttgccgtccaccaacagtaagtagtatt |
296 |
Q |
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| T |
44627091 |
atcttttatagtaatatatatatacttgcatcatttttatgattttttttcttccctttttcaggggacaagttgccgtccaccaacagtaagtaatatt |
44626992 |
T |
|
| Q |
297 |
gatccttgc---------aattaaattttagagctgt----catatttcttgatatgcatgttaataaaattgagagtaccatgttacaggcaataacat |
383 |
Q |
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||||||||| ||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44626991 |
gatccttgcaaaatacaaaattaaattttagaggagtcatacatatttcttg--atgcatgttaataaaattgagagtaccatgttacaggcaataacat |
44626894 |
T |
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| Q |
384 |
tgaatagatgctatcgatttcaaataaaaggatat |
418 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
44626893 |
tgaatagatgctatcgatttcaaataaaaggatat |
44626859 |
T |
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