View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20140_high_12 (Length: 252)
Name: NF20140_high_12
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_high_12 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 252
Target Start/End: Complemental strand, 36564044 - 36563808
Alignment:
| Q |
16 |
agacaattactgctggtacatgatttttagtcttgcaagtcaccatgataatttgggttatcaatattaaccatgctatgcatatgcatataagcctcat |
115 |
Q |
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| T |
36564044 |
agacaattactgctggtacatgatttttagtcttgcaagtcaccatgataatttgggttatcaatattaaccatgctatgcatatgcatataagcctcat |
36563945 |
T |
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| Q |
116 |
gataataatgaagtaataatattatgtactatttttattttaactcttttggagaagctattctggcttacacagaaggtttaatatatgtatatatagt |
215 |
Q |
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| T |
36563944 |
gataataatgaagtaataatattatgtactatttttattttaactcttttggagaagctattctggcttacacagaaggtttaatatatgtatatatagt |
36563845 |
T |
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| Q |
216 |
agttgttcaaggttagttaaatgtgattaatgcgcaa |
252 |
Q |
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| T |
36563844 |
agttgttcaaggttagttaaatgtgattaatgcgcaa |
36563808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 101
Target Start/End: Complemental strand, 36576671 - 36576588
Alignment:
| Q |
18 |
acaattactgctggtacatgatttttagtcttgcaagtcaccatgataatttgggttatcaatattaaccatgctatgcatatg |
101 |
Q |
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| T |
36576671 |
acaattactgctggtacataattttcattattgcaagtcaccatgatcatttgagttatcaatattagccatacgatgcatatg |
36576588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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