View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_high_14 (Length: 239)
Name: NF20140_high_14
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_high_14 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 42975057 - 42975279
Alignment:
| Q |
17 |
cacttgtgcctacattcagttagtactagtgttgacgtgtctggtttcaatgtcggtgtctattttgtgcttaggggagtagccttgactgcccaaaaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975057 |
cacttgtgcctacattcagttagtactagtgttgacgtgtctggtgtcaatgtcggtgtctattttgtgcttaggggagtagccttgactgcccaaaaca |
42975156 |
T |
|
| Q |
117 |
aattcataagttttatatttagttagcctggtaatatatatttaactactccaaacaactataagctaaaaataagtacaaacagaaaagtccaaaaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42975157 |
aattcataagttttatatttagttagcctagtaatatatatttaactactccaaacaactataagctaaaaataagtacaaacagaaaagtccaaaaatt |
42975256 |
T |
|
| Q |
217 |
atcatgtgattaataaatttatt |
239 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
42975257 |
atcatgtgattaataaatttatt |
42975279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University