View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_high_15 (Length: 237)
Name: NF20140_high_15
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 12031625 - 12031424
Alignment:
| Q |
20 |
tattaagaagaagattaaagtcccaaaaaattaaccatttggaagatgttctattttgataaagctccttaatagctgcacaagttaggtgttttaggga |
119 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12031625 |
tattaagaagaagattaaagtcccaaaaatttaaccatttggaagatgttctattttgataaagctccttaatagctgcacaagttaggtgttttaggga |
12031526 |
T |
|
| Q |
120 |
ataatatggataagcatacatatttgtagcataccaagaaacattcaaattattagcagtaatatacatgtcaattagcattttattatcttgaataata |
219 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
12031525 |
ataatatggataagcatagatacctgtagcataccaagaaacattcaaattattagcagtaatatacatgtcaattagcattttattattttgagtaata |
12031426 |
T |
|
| Q |
220 |
tc |
221 |
Q |
| |
|
|| |
|
|
| T |
12031425 |
tc |
12031424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University