View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_high_2 (Length: 608)
Name: NF20140_high_2
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_high_2 |
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| [»] scaffold1458 (1 HSPs) |
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| [»] scaffold0515 (1 HSPs) |
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| [»] scaffold0306 (1 HSPs) |
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| [»] scaffold0317 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 17 - 590
Target Start/End: Original strand, 9282531 - 9283104
Alignment:
| Q |
17 |
cacagaggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282531 |
cacagaggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgc |
9282630 |
T |
|
| Q |
117 |
taaacatcagcaaattgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagagaccttcaagggaggggacatgtttttgccaaattt |
216 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282631 |
taaacatcagcaaattgtctctagtcggtaacctattgcaaaagagcctccaagcctaaatagagaccttcaagggaggggacatgtttttgccaaattt |
9282730 |
T |
|
| Q |
217 |
agtttgaattaatttccacacaataagagttctgaataatgagcaaattatacgcacccctcacagagtaaccaccacaatggtgctcctgaacatgtgc |
316 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282731 |
agtttgaattaatttccacacaataagaattctgaataatgagcaaattatacgcacccctcacagagtaaccaccacaatggtgctcctgaacatgtgc |
9282830 |
T |
|
| Q |
317 |
cactctactgtgatgttgtgaagcttgtttaagatacatcctgtggtaacttacttacatcttgttatatggttctaatgtaggatgatagccatttgcg |
416 |
Q |
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|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282831 |
caccctactgtgatgttgtgaagcttgtttaagatacatcctgtggtaacttacttacatcttgttatatggttctaatgtaggatgatagccatttgcg |
9282930 |
T |
|
| Q |
417 |
aggatatatataatgcaagagcttggagttgaagaggtcctttactggacactagtgaagatctatctgtccccgcaaaatgttgggggttgagtaccat |
516 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9282931 |
aggatatatataatgcaagagcttggagttgaagaggccctttactggacactagtgaagatctatctgtccccgcaaaatgttgggggttgagtaccat |
9283030 |
T |
|
| Q |
517 |
cttttggtcataaatgttactgggcttgaatgccaacataagaagtttatacaagctttacaacaagtttggtt |
590 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
9283031 |
cttttggtcataaatgttactgggcttgaatgccaacataagaagtttatacaagctttacaacatgtttggtt |
9283104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 10442061 - 10442155
Alignment:
| Q |
20 |
agaggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg |
115 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||| |||||| ||||||||| |
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| T |
10442061 |
agagaggcgaaaacggggcaaaaaaggaacaagtgatgagctgtttccaatccaccgcatccggtca-acaaaattgagcgtcatgagaaatgatg |
10442155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 295 - 493
Target Start/End: Complemental strand, 40171256 - 40171046
Alignment:
| Q |
295 |
aatggtgctcctgaacatgtgccactctactgtgatgttgtgaagcttgtttaagatacatcctgtggtaacttac-ttacatcttgttatatggttcta |
393 |
Q |
| |
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||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||| ||| ||||| |
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| T |
40171256 |
aatggtgctcctgaacatgcgtcactctactgtgatgttgtgaagcttatttaagatacatcctgtggtaacttacattacttcttgttacatgcttcta |
40171157 |
T |
|
| Q |
394 |
atgtaggatgatagccatttgcgaggatatatataatgcaagag-----------cttggagttgaagaggtcctttactggacactagtgaagatctat |
482 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40171156 |
atgtaggttgatagccatttgcgaggatatatataatgcaagagctgagggtgaacttggagttgaagaggtcctttactggacactagtgaagatctat |
40171057 |
T |
|
| Q |
483 |
ctgtccccgca |
493 |
Q |
| |
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| ||||||||| |
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|
| T |
40171056 |
cggtccccgca |
40171046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 52 - 102
Target Start/End: Complemental strand, 9947307 - 9947257
Alignment:
| Q |
52 |
gtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtc |
102 |
Q |
| |
|
|||||||| |||||||||||||| |||| | |||||||||||||||||||| |
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| T |
9947307 |
gtgatgagctgtttccaatccactgcattctgtcacacaaaattgagagtc |
9947257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 18187047 - 18187322
Alignment:
| Q |
17 |
cacagaggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgc |
116 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
18187047 |
cacaaaggggcgaaaacggggaaagaaaggaacaagtgatgcgttgtttccaatccaccgcaaccagtcacacaaaattgagagtcatgagaaatgatgt |
18187146 |
T |
|
| Q |
117 |
taaacatcagcaaattgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagagaccttcaagggaggggacatgtttttgccaaattt |
216 |
Q |
| |
|
|| | || ||||||||| |||||||||||||||| |||| |||| ||||| ||||| | |||||||||||||| || ||||| ||| |||| |
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| T |
18187147 |
tacgcgacaccaaattgtccttagtcggtaacctattaccaataagcctccaagccaaaacaaagaccttcaaggga----acctgtttgtgctaaatga |
18187242 |
T |
|
| Q |
217 |
agtttgaattaatttccacacaataagagttctgaataatgagcaaattatacgcacccctcacagagtaaccaccacaa |
296 |
Q |
| |
|
||| |||| || || || || || ||||| |||| || ||||||| |||||| |||||||||| ||||||||| ||||| |
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|
| T |
18187243 |
agtctgaagtagctttcaaaccatgagagtcctgactagtgagcaagttatacacacccctcaccgagtaaccatcacaa |
18187322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 22 - 193
Target Start/End: Complemental strand, 24838303 - 24838132
Alignment:
| Q |
22 |
aggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatgctaaac |
121 |
Q |
| |
|
|||||||||||| ||| ||||| | ||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||| ||||||||||| || |
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|
| T |
24838303 |
aggggcgaaaacagggcaagaatgaaacaagtgatgtgctatttccaatccaccgcagccagtcacacaaaattgagagtcatgagaaatgatgctgcac |
24838204 |
T |
|
| Q |
122 |
atcagcaaattgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagagaccttcaaggga |
193 |
Q |
| |
|
|||| ||||||||| || | ||||||||||| | || || | ||||| ||||||||||||||| |||||| |
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|
| T |
24838203 |
atcaccaaattgtccttaattggtaacctattacgaataaggctccaagccaaaatagagaccttaaaggga |
24838132 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1458 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold1458
Description:
Target: scaffold1458; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 121 - 207
Alignment:
| Q |
29 |
aaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||| ||||||||| |
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|
| T |
121 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg |
207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0515 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0515
Description:
Target: scaffold0515; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 2068 - 2154
Alignment:
| Q |
29 |
aaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||| ||||||||| |
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|
| T |
2068 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg |
2154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0306 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: scaffold0306
Description:
Target: scaffold0306; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 2068 - 2154
Alignment:
| Q |
29 |
aaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||| |||| || ||||||||||||||||||||| ||||||||| |
|
|
| T |
2068 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccacatctagacacacaaaattgagagtcatgagaaatgatg |
2154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 29 - 115
Target Start/End: Complemental strand, 17640 - 17556
Alignment:
| Q |
29 |
aaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcatgggaaatgatg |
115 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| ||||||||| |
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|
| T |
17640 |
aaaacggggcaagaaaggaacaagtgatgagctgtttccaatccaccgcatctag--acacaaaattgagagtcatgagaaatgatg |
17556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 78
Target Start/End: Original strand, 15143234 - 15143295
Alignment:
| Q |
17 |
cacagaggggcgaaaacgggggaagaaaggaacaagtgatgagttgtttccaatccaccgca |
78 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||| |
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|
| T |
15143234 |
cacaaaggggcgaaagcggggcaagaaaggaacaagtgatgtgttgtttccactccaccgca |
15143295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 15143530 - 15143630
Alignment:
| Q |
82 |
agtcacacaaaattgagagtcatgggaaatgatgctaaacatcagcaaattgtctctagtcggtaacctattgccaaagagccgccaagtcaaaatagag |
181 |
Q |
| |
|
||||||||||||||| ||| | || |||||||| || || ||| ||||||||| |||||| |||||| || | || |||| |||||||||||||||| |
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|
| T |
15143530 |
agtcacacaaaattgtgaggcgtgagaaatgatcttacacgtcaccaaattgtccttagtcgataacctgttacgaataagcctccaagtcaaaatagag |
15143629 |
T |
|
| Q |
182 |
a |
182 |
Q |
| |
|
| |
|
|
| T |
15143630 |
a |
15143630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 104
Target Start/End: Complemental strand, 31851849 - 31851785
Alignment:
| Q |
40 |
agaaaggaacaagtgatgagttgtttccaatccaccgcatccagtcacacaaaattgagagtcat |
104 |
Q |
| |
|
||||||||||| |||||| ||||| ||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
31851849 |
agaaaggaacatgtgatgcgttgtgtccaatccaccgcggccaatcacgcaaaattgagagtcat |
31851785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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