View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20140_high_9 (Length: 286)
Name: NF20140_high_9
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 42026079 - 42025806
Alignment:
| Q |
1 |
ctaagttctaattaagtataatttttgtggtgttgatgcannnnnnnnnncttgcagcaggaggagatgccaaacccagctccaaattttatgatgaacc |
100 |
Q |
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| T |
42026079 |
ctaagttctaattaagtataacttttgtggtgttgatgattttttttttccttgcagcaggaggagatgccaaacccagctccaaattttatgatgaacc |
42025980 |
T |
|
| Q |
101 |
atataaatgcaccaaatgatttctctatgcctcctactaggactgtagctgatgagcttccacgcccaccaatcataaacagacgtgagattcattatct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42025979 |
atataaatgcaccaaatgatttctctatgcctcctactaggactgtagctgatgagcttccacgcccaccaatcataaacagacgtgagattcattatct |
42025880 |
T |
|
| Q |
201 |
atacttattttgtttgagtaacttaggtttccctcaatcaaaacgatggnnnnnnnggtcactactatgatttt |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42025879 |
atacttattttgtttgagtaacttaggtttccctcaatcaaaacgatggtttttttggtcactactatgatttt |
42025806 |
T |
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