View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_low_1 (Length: 636)
Name: NF20140_low_1
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 517; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 1901239 - 1900619
Alignment:
| Q |
18 |
actagtaactgtttccattgtttgttttctttttgggttttgtaacagttattctagcaaaactactttttattttaatctcctgaatcaacaaatcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1901239 |
actagtaactgtttccattgtttgttttctttttgggttttgtaacagttattttagcaaaactactttttattttaatctcctgaatcaacaaatcaaa |
1901140 |
T |
|
| Q |
118 |
gcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaataatcttcctttaaaagctagttatcggtgggaaaaaaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1901139 |
gcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaataatcttcctttaaaagctagttatcggtgggaaaaaaccaa |
1901040 |
T |
|
| Q |
218 |
accacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttggcaccccatattacccacatccgtagcacagtttttctttcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1901039 |
accacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttggcaccccatattacagacatccgtagcacagtttttctttcat |
1900940 |
T |
|
| Q |
318 |
tccctataccccatattaaccacttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatat------------- |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1900939 |
tccctataccccatattaaccacttgccaagggagagtcatttgagtagagtctattcatacgtacatcttaatggatggattatattatgtcgttatgc |
1900840 |
T |
|
| Q |
405 |
tcgatcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatg |
504 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
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|
| T |
1900839 |
tcgatcttgcatggtagattcttgaagccccatttaccatatatcctgttaggaacccagaaccttacggagaaaataacacaacaacacttaataaatg |
1900740 |
T |
|
| Q |
505 |
gaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctccagtcctcctagataagagatgactctcta |
604 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
1900739 |
gaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccagagctaagcttctccagtcctcctagataagagatgactctcta |
1900640 |
T |
|
| Q |
605 |
aagcccttccctctctccttt |
625 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1900639 |
aagcccttccctctctccttt |
1900619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 517; E-Value: 0
Query Start/End: Original strand, 18 - 625
Target Start/End: Complemental strand, 1910685 - 1910065
Alignment:
| Q |
18 |
actagtaactgtttccattgtttgttttctttttgggttttgtaacagttattctagcaaaactactttttattttaatctcctgaatcaacaaatcaaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910685 |
actagtaactgtttccattgtttgttttctttttgggttttgtaacagttattttagcaaaactactttttattttaatctcctgaatcaacaaatcaaa |
1910586 |
T |
|
| Q |
118 |
gcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaataatcttcctttaaaagctagttatcggtgggaaaaaaccaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1910585 |
gcggtagaaaaaataaatacaaggttgcattttgacaagcatttgagcgcttgggaaataatcttcctttaaaagctagttatcggtgggaaaaaaccaa |
1910486 |
T |
|
| Q |
218 |
accacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttggcaccccatattacccacatccgtagcacagtttttctttcat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
1910485 |
accacttaaatgctacaccgagcatcacatcgacatattactcatcgcgggactttggcaccccatattacagacatccgtagcacagtttttctttcat |
1910386 |
T |
|
| Q |
318 |
tccctataccccatattaaccacttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatat------------- |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1910385 |
tccctataccccatattaaccacttgccaagggagagtcatttgagtagagtctattcatacgtacatcttaatggatggattatattatgtcgttatgc |
1910286 |
T |
|
| Q |
405 |
tcgatcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatg |
504 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||| |||||||||| |
|
|
| T |
1910285 |
tcgatcttgcatggtagattcttgaagccccatttaccatatatcctgttaggaacccagaaccttacggagaaaataacacaacaacacttaataaatg |
1910186 |
T |
|
| Q |
505 |
gaatctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctccagtcctcctagataagagatgactctcta |
604 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1910185 |
gaatgtattatttacgaaaaaggaaaattacagaagaccagtactcctaccgcccagagctaagcttctccagtcctcctagataagagatgactctcta |
1910086 |
T |
|
| Q |
605 |
aagcccttccctctctccttt |
625 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
1910085 |
aagcccttccctctctccttt |
1910065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 63 - 326
Target Start/End: Complemental strand, 1894322 - 1894058
Alignment:
| Q |
63 |
cagttattctagcaaaactactttttattttaa-tctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcattt |
161 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| | || | || || ||||||||| |||||||||| |||||||||||||||||||||||| |||||| |
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|
| T |
1894322 |
cagttattttagcataactactttttattttaaatttcattaagcagcaaatcaaattggtagaaaaa-taaatacaaggttgcattttgacatgcattt |
1894224 |
T |
|
| Q |
162 |
gagcgcttgggaaataatcttcctttaaaagctagttatcggtggg-aaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |
|
|
| T |
1894223 |
gagcgcttgggaaataatcttcctttaaaagctagttatcagtggggaaaaaaccaaaccacttaaatactacactgagcatcacattaacatactactc |
1894124 |
T |
|
| Q |
261 |
atcgcgggactttggcaccccatattacccacatccgtagcacagtttttctttcattccctatac |
326 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1894123 |
atcgtaggactttggtaccccataataaccacatccatagcacagtttttctttcattccctatac |
1894058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 63 - 326
Target Start/End: Complemental strand, 1903768 - 1903504
Alignment:
| Q |
63 |
cagttattctagcaaaactactttttattttaa-tctcctgaatcaacaaatcaaagcggtagaaaaaataaatacaaggttgcattttgacaagcattt |
161 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||| | || | || || ||||||||| |||||||||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1903768 |
cagttattttagcataactactttttattttaaatttcattaagcagcaaatcaaattggtagaaaaa-taaatacaaggttgcattttgacatgcattt |
1903670 |
T |
|
| Q |
162 |
gagcgcttgggaaataatcttcctttaaaagctagttatcggtggg-aaaaaaccaaaccacttaaatgctacaccgagcatcacatcgacatattactc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |||||| ||||||||||| ||||| ||||| |
|
|
| T |
1903669 |
gagcgcttgggaaataatcttcctttaaaagctagttatcagtggggaaaaaaccaaaccacttaaatactacactgagcatcacattaacatactactc |
1903570 |
T |
|
| Q |
261 |
atcgcgggactttggcaccccatattacccacatccgtagcacagtttttctttcattccctatac |
326 |
Q |
| |
|
|||| ||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
1903569 |
atcgtaggactttggtaccccataataaccacatccatagcacagtttttctttcattccctatac |
1903504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 339 - 572
Target Start/End: Complemental strand, 1894016 - 1893770
Alignment:
| Q |
339 |
acttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatatt-------------cgatcttgcatggtagattc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||| | ||||| |||||||||||| |
|
|
| T |
1894016 |
acttgccaagggagagtcatttgagtagagtctattcgtatgtataacttaatggatggattctattacgtcgttatgctctatctttcatggtagattc |
1893917 |
T |
|
| Q |
426 |
ttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaa |
525 |
Q |
| |
|
|| |||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
1893916 |
acgatgccccatttacaatatagcctgtcagggacccagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaa |
1893817 |
T |
|
| Q |
526 |
ggaaaattacaaaagaccggtactcctaccgctcagagctaagctcc |
572 |
Q |
| |
|
|||||||||| || |||||||||||| || |||||| ||||||| |
|
|
| T |
1893816 |
ggaaaattaccgttgaacggtactcctactgcccagagcaaagctcc |
1893770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 339 - 572
Target Start/End: Complemental strand, 1903462 - 1903216
Alignment:
| Q |
339 |
acttgccaagggagagtcatttgagtagattctattcatacgtacatcttaatggatggattatatt-------------cgatcttgcatggtagattc |
425 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || ||| | ||||||||||||||| |||| | ||||| |||||||||||| |
|
|
| T |
1903462 |
acttgccaagggagagtcatttgagtagagtctattcgtatgtataacttaatggatggattctattacgtcgttatgctctatctttcatggtagattc |
1903363 |
T |
|
| Q |
426 |
ttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaatctattatttacgaaaaa |
525 |
Q |
| |
|
|| |||||||||| ||||| ||||| ||| ||||||||||||| ||| ||||||||||| |||| |||||||||||||| ||| |||||||||||| |
|
|
| T |
1903362 |
acgatgccccatttacaatatagcctgtcagggacccagaacctaacggagaaaataacacagcaacacttaataaatggaatgtatcatttacgaaaaa |
1903263 |
T |
|
| Q |
526 |
ggaaaattacaaaagaccggtactcctaccgctcagagctaagctcc |
572 |
Q |
| |
|
|||||||||| || |||||||||||| || |||||| ||||||| |
|
|
| T |
1903262 |
ggaaaattaccgttgaacggtactcctactgcccagagcaaagctcc |
1903216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 408 - 574
Target Start/End: Original strand, 2934446 - 2934605
Alignment:
| Q |
408 |
atcttgcatggtagattcttgaatccccatttaccatatatcctgttaggaacccagaacctaatggataaaataacacaacaacgtttaataaatggaa |
507 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| || || ||||||||| ||| ||||||||| ||| ||||||||||| |||| |||||||| |
|
|
| T |
2934446 |
atcttgcatggtagattcatgatgccccatttacaatgtagcctgttagggacctagaacctaacggagaaaataacacagcaac-------aaatggaa |
2934538 |
T |
|
| Q |
508 |
tctattatttacgaaaaaggaaaattacaaaagaccggtactcctaccgctcagagctaagctcctc |
574 |
Q |
| |
|
| ||||||||| |||||||||||||||| || |||||||||||| || ||||| ||||||||| |
|
|
| T |
2934539 |
tgtattatttatgaaaaaggaaaattaccgttgaacggtactcctactgcccagaggaaagctcctc |
2934605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 1894395 - 1894363
Alignment:
| Q |
18 |
actagtaactgtttccattgtttgttttctttt |
50 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
1894395 |
actagtaactgtttcctttgtttgttttctttt |
1894363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 1903841 - 1903809
Alignment:
| Q |
18 |
actagtaactgtttccattgtttgttttctttt |
50 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
1903841 |
actagtaactgtttcctttgtttgttttctttt |
1903809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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