View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_low_2 (Length: 627)
Name: NF20140_low_2
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 11 - 612
Target Start/End: Complemental strand, 40096311 - 40095710
Alignment:
| Q |
11 |
agaatatgagattgattcttctgaacttgattttacaaatagtgtttgcataacaaaggtaatattttaagttctttttccaacagcatacgattgtgtt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40096311 |
agaatatgagattgattcttctgaacttgattttacaaatagtgtttgcataacaaaggtaatattttaagttctttttccaacagcatacgattgtgtt |
40096212 |
T |
|
| Q |
111 |
cattcatcaacttcttcctgtgtcctatctcctagcatattattgtgagtcactgtctgtctgtttttcaccctgcattgcatattttatattggacatt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40096211 |
cattcatcaacttcttcctgtgtcctatctcctagcatattattgtgagtcactgtctgtctgtttttcaccctgcattgcatattttatattggacatt |
40096112 |
T |
|
| Q |
211 |
ttagggaactttccggagtgcaatttggcgtggaattcaagtagctgttaaaactcttgaggaggatgtgttcaccgatgatgataaagtgtgggttggt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40096111 |
ttagggaactttccggagtgcaatttggcgtggaattcaagtagctgttaaaactcttgaggaggatgtgttcaccgatgatgataaagtgtgggttggt |
40096012 |
T |
|
| Q |
311 |
ctaattagtaattatacaatctgttgttttattcatattaattggattattcaattcacaacttgtattcccatgtccttcagaaaggcatttcacgatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40096011 |
ctaattagtaattatacaatctgttgttttattcatattaattggattattcaattcacaacttgtattcccatgtccttcagaaaggcatttcacgatg |
40095912 |
T |
|
| Q |
411 |
agcttacattacttcagaaagtaaggcatccaaatgttgtccaatttttgggtgctgtgacacaaagcaccccaatgatgattgtcactgagtatctacc |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40095911 |
agcttacattacttcagaaagtaaggcatccaaatgttgtccaatttttgggtgctgtgacacaaagcaccccaatgatgattgtcactgagtatctacc |
40095812 |
T |
|
| Q |
511 |
ccaggttagtgttgatactacactgggtataatgaagattttaatgatcttttatatttaatgatggtgtttatgaacaaatcatgttgattagttgaat |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40095811 |
tcaggttagtgttgatactacactgggtataatgaagattttaatgatcttttatatttaatgatggtgtttatgaacaaatcatgttgattagttgaat |
40095712 |
T |
|
| Q |
611 |
at |
612 |
Q |
| |
|
|| |
|
|
| T |
40095711 |
at |
40095710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 435 - 517
Target Start/End: Original strand, 5514198 - 5514280
Alignment:
| Q |
435 |
ggcatccaaatgttgtccaatttttgggtgctgtgacacaaagcaccccaatgatgattgtcactgagtatctaccccaggtt |
517 |
Q |
| |
|
||||||||||||| || || ||| | |||||||||||||| || || |||||||||||||| || || ||||| ||| ||||| |
|
|
| T |
5514198 |
ggcatccaaatgtagtgcagtttcttggtgctgtgacacagagtactccaatgatgattgtgacagaatatcttcccaaggtt |
5514280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University