View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_low_4 (Length: 550)
Name: NF20140_low_4
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 487; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 487; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 38814351 - 38813837
Alignment:
| Q |
19 |
accccagtcatacgccgtttttaaaggcctgtacttccgtaaatcaagcttacataccacaaaagctaattcatcaacaccacaaaaactcaaatgaggc |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814351 |
accccagtcatacaccgtttttaaaggcctgtacttccgtaaatcaagtttacataccacaaaagctaattcatcaacaccacaaaaactcaaatgaggc |
38814252 |
T |
|
| Q |
119 |
ctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814251 |
ctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaa |
38814152 |
T |
|
| Q |
219 |
ctccaacaaatgtaacatttgggagacgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814151 |
ctccaacaaatgtaacatttgggagacgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaattgaaaccatttaggtg |
38814052 |
T |
|
| Q |
319 |
aatgataagacacgagtgtccatcacagagctgcagggttgcacatttggatttggtaactgttcctggctccgtgccatgtaacagaagccattcagca |
418 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814051 |
aatgataagacacgagtgtccatcacagaactgcagtgttgcacatttggatttggtaactgttcctggctccgtgccatgtaacagaagccattcagca |
38813952 |
T |
|
| Q |
419 |
tcaagcccgataactttggttcgatgactgttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggatgttgctcgagtcttga |
518 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38813951 |
tcaagcccgataactttggttcgatgattgttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggatgttgctctggtcttga |
38813852 |
T |
|
| Q |
519 |
tgtgtactccattca |
533 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
38813851 |
tgtgtactccattca |
38813837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 86 - 264
Target Start/End: Complemental strand, 38818684 - 38818506
Alignment:
| Q |
86 |
aattcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgct |
185 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| || |||| ||| | ||||| || || |||||||| ||||||||||||||||||| ||||| | |
|
|
| T |
38818684 |
aattcatcaacaccacaaaaactcaaacgaggcttcctcatgacagtagcagctaacgggccaagttccacagcatttctacatccaatcccatagtatg |
38818585 |
T |
|
| Q |
186 |
tctccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtga |
264 |
Q |
| |
|
| |||||||| |||| ||| ||||||||||||||||||||||| ||||||||||| | ||||||||| ||||| ||||| |
|
|
| T |
38818584 |
tttccaacttggccacattgtctttgattccaactccaacaaaggtaacatttggcatacgaagaaagttaagtagtga |
38818506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 38820908 - 38820731
Alignment:
| Q |
88 |
ttcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttc |
187 |
Q |
| |
|
||||||||| || |||||||||||| |||| ||||| ||||||| ||||| |||||||||||||| ||||||||||| |||| || ||||| | |||| |
|
|
| T |
38820908 |
ttcatcaacgccgcaaaaactcaaactaggcatcttcctaacactagcagccaagggtccaagttccacagcatttctgcatctaaccccatattccttc |
38820809 |
T |
|
| Q |
188 |
tccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtgat |
265 |
Q |
| |
|
|| | ||||||||||| | ||||| ||||| |||||||| ||| || ||| ||||||||||||||||||| |||| |
|
|
| T |
38820808 |
tcaagtttagccaaattatgattgataccaacaccaacaaaggtataatctggaagacgaagaaaattaagcaatgat |
38820731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 228
Target Start/End: Complemental strand, 38822835 - 38822681
Alignment:
| Q |
77 |
acaaaagctaattcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcat---ttctacatccaa |
173 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||| | | ||||||| | ||||||| ||||||||||||| |||| || | |||||| |
|
|
| T |
38822835 |
acaaaagctaattcatcaagaccacaaaaactcaagcgaggcatatccataacagtagcagcaagtggtccaagttcaaatgcatttattatgtatccaa |
38822736 |
T |
|
| Q |
174 |
atccatactgcttctccaacttagccaaattctctttgattccaactccaacaaa |
228 |
Q |
| |
|
||| |||||||||| |||||| |||| || |||||||| ||||| || ||||| |
|
|
| T |
38822735 |
tcccacactgcttctctaacttaaccaatttatctttgataccaacgcctacaaa |
38822681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 265
Target Start/End: Complemental strand, 38831303 - 38831126
Alignment:
| Q |
88 |
ttcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttc |
187 |
Q |
| |
|
||||||||||||||| ||| |||| ||||| |||| ||||| ||||||| ||||||||||| ||||||||||| |||| || ||||| | |||| |
|
|
| T |
38831303 |
ttcatcaacaccacagaaagccaaacgaggcactttcaagacactagcagcaagaggtccaagttccacagcatttctgcatctaatcccatattccttc |
38831204 |
T |
|
| Q |
188 |
tccaacttagccaaattctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtgat |
265 |
Q |
| |
|
| | ||||||||||| ||||| || ||||| | ||||| ||| || ||| || |||||||| ||||||| |||| |
|
|
| T |
38831203 |
ttaagcttagccaaatcatctttaataccaacactgacaaaggtataatctggcagtcgaagaaagttaagcaatgat |
38831126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 264
Target Start/End: Original strand, 17198191 - 17198416
Alignment:
| Q |
39 |
ttaaaggcctgtacttccgtaaatcaagcttacataccacaaaagctaattcatcaacaccacaaaaactcaaatgaggcctcttcataacacttgcagc |
138 |
Q |
| |
|
|||||||||| ||||| || | |||||| ||| |||||||| || | ||||||||| ||||||||||| ||||||||| ||||| | | | ||||| |
|
|
| T |
17198191 |
ttaaaggcctatacttacgaagatcaagtttatcgaccacaaatgcaagttcatcaacgccacaaaaacttaaatgaggcgcattcatgagagtggcagc |
17198290 |
T |
|
| Q |
139 |
aaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaattctctttgattccaactccaacaaatgtaacattt |
238 |
Q |
| |
|
| || |||||||||||| |||||||| ||||||| |||| ||||||||||| ||| | ||||| || || || ||| ||||| || ||| |||| |
|
|
| T |
17198291 |
tagggttccaagttcaactgcatttctgcatccaatcccatgatgcttctccaagttaacaaaattatccttaatgccacaaccaacgaaggtataattt |
17198390 |
T |
|
| Q |
239 |
gggagacgaagaaaattaagcagtga |
264 |
Q |
| |
|
|| |||||||||||||||| ||||| |
|
|
| T |
17198391 |
ggttgacgaagaaaattaagaagtga |
17198416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 11386781 - 11386833
Alignment:
| Q |
140 |
aagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaa |
192 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| |||| ||||||||||| |
|
|
| T |
11386781 |
aagggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaa |
11386833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University