View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20140_low_5 (Length: 535)
Name: NF20140_low_5
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 446; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 11 - 519
Target Start/End: Complemental strand, 34756284 - 34755775
Alignment:
| Q |
11 |
aagaatatagtgagttatgctgatcgctggaaaacaaccatagtcctaatcaatactcacatattacaatgaactaattgggcatattaatgggtttctc |
110 |
Q |
| |
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|||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
34756284 |
aagagtatagtgagttacgctggtcgctggaaaacaaccatagtcctaatcaatactcacatattagaatgaactaattgggcatattaatgggtttctc |
34756185 |
T |
|
| Q |
111 |
atttttggttaagcagattgagaagatttgcattagtttttgttcctaattgttgagaagtatgaggtttattctatttgt-gtgtgatacttaattata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
34756184 |
atttttggttaagcagattgagaagatttgcattagtttttgttcctaatagttgagaagtatgaggtttattctatttgttgtgtgatacttaattata |
34756085 |
T |
|
| Q |
210 |
ttggtattaatagagccttacaatgtattcaatgtgatatatatgtggaaatacatagagctttaaaatgtatctaattgctttcgcaggaacttgccgt |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34756084 |
ttggtattaatagagccttacaatgtattcaatgtgatatatatgtggaaatatatagagctttaaaatgtatctaattgctttcgcaggaacttgctgt |
34755985 |
T |
|
| Q |
310 |
aaaaatgacctccagttccgttgatgcgattggtagacgtaagcataagctttctaagaggcaaaaatccaacaagggtcaagacttgataagcaaccta |
409 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
34755984 |
aaaaatgacctccatctccgttgatgcgattggtagacgtaagcataagctttctaagaggcaaaattccatcaagggtcaagacttgataagcaaccta |
34755885 |
T |
|
| Q |
410 |
cctgaccacattattggttacattctttattttcttcatactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaattta |
509 |
Q |
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|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34755884 |
cctgaccacattattggttacattcttttttttcttcctactaaggaagcagttcgtactagcgttttatcaaagaagtggatatacctctggaaattta |
34755785 |
T |
|
| Q |
510 |
tcaccaaact |
519 |
Q |
| |
|
|||||||||| |
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| T |
34755784 |
tcaccaaact |
34755775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 255 - 519
Target Start/End: Complemental strand, 34747702 - 34747438
Alignment:
| Q |
255 |
tggaaatacatagagctttaaaatgtatctaattgctttcgcaggaacttgccgtaaaaatgacctccagttccgttgatgcgattggtagacgtaagca |
354 |
Q |
| |
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|||||||| || |||||||| ||||||||||| ||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||| |
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| T |
34747702 |
tggaaatatattgagctttacaatgtatctaactgctttcacaggaacttgctgtaaaaatggtctccagttccgttgatgcgattggtagatgtaagca |
34747603 |
T |
|
| Q |
355 |
taagctttctaagaggcaaaaatccaacaagggtcaagacttgataagcaacctacctgaccacattattggttacattctttattttcttcatactaag |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||| |
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| T |
34747602 |
taagctttctaagaggcaaaaatccaacaagggacaagacttgataagcaacctacctgaccacattattggttgcgttctttcttttcttcctactaag |
34747503 |
T |
|
| Q |
455 |
gaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcaccaaact |
519 |
Q |
| |
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|| |||||| |||||| ||||||||||||| |||||||||||| |||| ||||||||| ||||| |
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|
| T |
34747502 |
gatgcagtttctaccagtgttttatcaaagaggtggatatacctatggacatttatcacaaaact |
34747438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 276 - 519
Target Start/End: Complemental strand, 34752300 - 34752072
Alignment:
| Q |
276 |
aatgtatctaattgctttcgcaggaacttgccgtaaaaatgacctccagttccgttgatgcgattggtagacgtaagcataagctttctaagaggcaaaa |
375 |
Q |
| |
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||||||| ||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34752300 |
aatgtatttaattgctttcacaggaacttgctgtaaaaatggcctccagttccgttgatgcgattgatagacgtaagcataagctttc------------ |
34752213 |
T |
|
| Q |
376 |
atccaacaagggtcaagacttgataagcaacctacctgaccacattattggttacattctttattttcttcatactaaggaagcagttcgtaccagcgtt |
475 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
34752212 |
---cagcaagggtcaagacttgataagcaacctaccagaccacattattggttacattctttattttctttctactaaggaagcagttcgtaccagcgtt |
34752116 |
T |
|
| Q |
476 |
ttatcaaagaagtggatatacctctggaaatttatcaccaaact |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34752115 |
ttatcaaagaagtggatatacctctggaaatttatcaccaaact |
34752072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 227 - 508
Target Start/End: Complemental strand, 34760162 - 34759883
Alignment:
| Q |
227 |
ttacaatgtattcaatgtgatatatatgtggaaatacatagagctttaaaatgtatctaattgctttcgcaggaacttgccgtaaaaatgacctccagtt |
326 |
Q |
| |
|
||||||||||||| ||||||||| |||| |||||| || || ||||| ||||||||||||||||||| ||||||||||| |||||||| ||||||||| |
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|
| T |
34760162 |
ttacaatgtattctatgtgatatgtatg--gaaatatattgacctttacaatgtatctaattgctttcacaggaacttgcattaaaaatggcctccagtt |
34760065 |
T |
|
| Q |
327 |
ccgttgatgcgattggtagacgtaagcataagctttctaagaggcaaaaatccaacaagggtcaagacttgataagcaacctacctgaccacattattgg |
426 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
34760064 |
ccgttgatgcgattggtagacgtaagcataagctttcctagaggcgaaaatccagcaaggatcaagacttgataagcaacctacctgaccacatcattgg |
34759965 |
T |
|
| Q |
427 |
ttacattctttattttcttcatactaaggaagcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaattt |
508 |
Q |
| |
|
| |||||||| ||||||| ||||||| |||||| ||| | ||||||||||||| ||||||| |||||||||||||| |
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|
| T |
34759964 |
ctgcattctttcttttctttctactaagagtgcagtttctacttgtgttttatcaaagaggtggataaacctctggaaattt |
34759883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 258 - 514
Target Start/End: Complemental strand, 34743135 - 34742879
Alignment:
| Q |
258 |
aaatacatagagctttaaaatgtatctaattgctttcgcaggaacttgccgtaaaaatgacctccagttccgttgatgcgattggtagacgtaagcataa |
357 |
Q |
| |
|
||||| ||||||||||| ||||||||||||| |||| |||||||||| | ||||||| | ||||| ||||||| | | ||||||||||||| ||| |
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|
| T |
34743135 |
aaatatatagagctttacaatgtatctaattattttcataggaacttgctgcaaaaatggacaatagttctgttgatgagttgggtagacgtaagcgtaa |
34743036 |
T |
|
| Q |
358 |
gctttctaagaggcaaaaatccaacaagggtcaagacttgataagcaacctacctgaccacattattggttacattctttattttcttcatactaaggaa |
457 |
Q |
| |
|
||||||||||| ||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||| |
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| T |
34743035 |
gctttctaagatgcaaaaatccagcaaaggttaagacttgataagcaacctacctgaccacattattggttgcattctttcttttcttcatattaaggaa |
34742936 |
T |
|
| Q |
458 |
gcagttcgtaccagcgttttatcaaagaagtggatatacctctggaaatttatcacc |
514 |
Q |
| |
|
||| || ||||||||||||||||||||| |||||||| |||||||||| |||||||| |
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|
| T |
34742935 |
gcaatttgtaccagcgttttatcaaagaggtggatatccctctggaaaattatcacc |
34742879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 40 - 238
Target Start/End: Complemental strand, 34752491 - 34752293
Alignment:
| Q |
40 |
gaaaacaaccatagtcctaatcaatactca----catattacaatgaactaattgggcatattaatgggtttctcatttttggttaagcagattgagaag |
135 |
Q |
| |
|
|||||||||| |||||||| ||| |||||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
34752491 |
gaaaacaaccgtagtcctactcagtactcaatcacatattagaatgaactaattgggcacattaatgggtttct-atttttggttaagcagattgagaag |
34752393 |
T |
|
| Q |
136 |
atttgcattagtttttgttcctaattgttgagaagtatgaggtttattctatttg-tgtgtgatacttaattatattggtattaatagagccttacaatg |
234 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||| |||||||| |||| |||||||||| | |||||||||||||||| |||||||||| |
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|
| T |
34752392 |
atttgcattaatttttgttcctaattgttgagaagtttgagatttattctttttgttgtgtgatac----tagtattggtattaatagatccttacaatg |
34752297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 171
Target Start/End: Complemental strand, 34747811 - 34747758
Alignment:
| Q |
118 |
gttaagcagattgagaagatttgcattagtttttgttcctaattgttgagaagt |
171 |
Q |
| |
|
|||||||| |||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
34747811 |
gttaagcaaattgggaagatttatattagtttttgttcctaattgttgagaagt |
34747758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 187
Target Start/End: Complemental strand, 34760307 - 34760199
Alignment:
| Q |
78 |
aatgaactaattgggcatattaatgggtttctcatttttggttaagcagattgagaagatttgcattagtttttgttcctaattgttgagaagtatgagg |
177 |
Q |
| |
|
||||||| ||| ||||| ||||| | |||||| || |||||||||| | |||| |||||||| |||||||| ||| ||| ||||||||||||| ||| |
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|
| T |
34760307 |
aatgaacaaatcgggcacattaacgagtttct-atatttggttaagaaaattgggaagatttatattagtttgtgtcccttattgttgagaagtttgaca |
34760209 |
T |
|
| Q |
178 |
tttattctat |
187 |
Q |
| |
|
||||||||| |
|
|
| T |
34760208 |
cttattctat |
34760199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 379 - 446
Target Start/End: Complemental strand, 26305765 - 26305698
Alignment:
| Q |
379 |
caacaagggtcaagacttgataagcaacctacctgaccacattattggttacattctttattttcttc |
446 |
Q |
| |
|
|||||| ||||||||| ||||||| |||||||| ||||||||||||||| ||||||| |||||||| |
|
|
| T |
26305765 |
caacaacggtcaagacaagataagcgacctacctaaccacattattggttctattctttcttttcttc |
26305698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 496
Target Start/End: Complemental strand, 51944803 - 51944691
Alignment:
| Q |
384 |
agggtcaagacttgataagcaacctacctgaccacattattggttacattctttattttcttcatactaaggaagcagttcgtaccagcgttttatcaaa |
483 |
Q |
| |
|
|||||||||| |||||||| ||||||||||| |||| ||| |||||||| |||||||| |||||| | |||||||||||| | | ||||||| | |
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|
| T |
51944803 |
agggtcaagatatgataagcgacctacctgactttgttatcggtcgcattctttcttttcttcctactaaatatgcagttcgtaccggtgctttatcaca |
51944704 |
T |
|
| Q |
484 |
gaagtggatatac |
496 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
51944703 |
gaggtggatatac |
51944691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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