View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20140_low_6 (Length: 379)
Name: NF20140_low_6
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 361
Target Start/End: Original strand, 46091924 - 46092270
Alignment:
| Q |
15 |
acatcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgcta |
114 |
Q |
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| T |
46091924 |
acatcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgcta |
46092023 |
T |
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| Q |
115 |
acaatattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcaga |
214 |
Q |
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| T |
46092024 |
acaatattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcaga |
46092123 |
T |
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| Q |
215 |
aaaatatgctcagaaagaaggcgcgaaagcgatgaaattggctactcgtaaggccaaccgcgtcataggtccaattatctctttcggatgggacttcttt |
314 |
Q |
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| T |
46092124 |
aaaatatgctcagaaagaaggcgcgaaagccatgaaattggctactcataaggccaaccgcgtcataggtccgattatctctttcggatgggacttcttt |
46092223 |
T |
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| Q |
315 |
gaagctgtttaccatggtggtacctttacagagggatttcttagggg |
361 |
Q |
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| T |
46092224 |
gaagctgtttaccatggtggtacctttacagagggatttcttagggg |
46092270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 358
Target Start/End: Original strand, 46086824 - 46087164
Alignment:
| Q |
18 |
tcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaaca |
117 |
Q |
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| T |
46086824 |
tcatccaaaagtgggaagtttacattattaaattgctttgatttgggctctggaagtttagcatgtggggttaaagaaagtgtgaagctctatgttaaca |
46086923 |
T |
|
| Q |
118 |
atattagatcttctcatgttgaaaaagcaagagataatgcaatcctatctgctcttgtagatgctgcttcacagggtatgccaccaactgattcagaaaa |
217 |
Q |
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| T |
46086924 |
atattagatctgctcatgttgaaaaagcaagacatgatgcaatccaatctgctcttgttgatgctgcttcacagggtatgtcgccaattgtttcagaaaa |
46087023 |
T |
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| Q |
218 |
atatgctcagaaagaaggcgcgaaagcgatgaaattggctactcgtaaggccaaccgcgtcataggtccaattatctctttcggatgggacttctttgaa |
317 |
Q |
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| T |
46087024 |
acatgcgcagaaacaaggtaaaaaagcggcgaaattggctacccgtaaggccaaccgcatcacaggtcccatcatctcttccggctgggacttttttgaa |
46087123 |
T |
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| Q |
318 |
gctgtttaccatggtggtacctttacagagggatttcttag |
358 |
Q |
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| T |
46087124 |
gctgtttactatggtggtacctttacagagggattccttag |
46087164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 37476517 - 37476647
Alignment:
| Q |
18 |
tcatccaaaagtgggaagtttacattcttaaattgctttgatatgggctctggaactttagcatgtggggtcaaggaaagtgtgaagctctatgctaaca |
117 |
Q |
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|||||| | ||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||| ||||| ||| | || || |||||| | ||| |
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| T |
37476517 |
tcatcccagagtggaaagttcacattattaaactgttttgacatgggttctggaacgttggcatgtgctgtcaaagaaggcgtcaaactctatttttaca |
37476616 |
T |
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| Q |
118 |
atattagatcttctcatgttgaaaaagcaag |
148 |
Q |
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| T |
37476617 |
gtattagatctactcatgttgaaaaagcaag |
37476647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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