View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20140_low_7 (Length: 366)
Name: NF20140_low_7
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20140_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 19 - 357
Target Start/End: Complemental strand, 6959979 - 6959641
Alignment:
| Q |
19 |
cagcaccttccgttcttgaagcagggaccatttcagcgaaaactaaagggtacccagatgagaaatcacgaaggagaatgagaaaaaacaaaactttatg |
118 |
Q |
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| T |
6959979 |
cagcaccttccgttcttgaagcagggaccatttcagcgaaaactaaagggtacccagatgagaaatcacgaaggagaatgagaaaaaacaaaactttatg |
6959880 |
T |
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| Q |
119 |
atgaatcagtgaaaaggatttaaagggtggttgagattttgggattagggttcttagaaaggaaaatgaaaatgatagcggctttgagaagaacaagcga |
218 |
Q |
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| T |
6959879 |
atgaatcagtgaaaaagatttaaagggtggttgagattttgggattagggttcttagaaaggaaaatgaaaatgatagcggctttgagaagaacaagcga |
6959780 |
T |
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| Q |
219 |
agcgacagagtgagggttttgaaaacctttgacaaatcacgttttatgtgttttgagggaaaataattatgtcattaatgnnnnnnnnattagtgagtga |
318 |
Q |
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| T |
6959779 |
agcgacagagtgagggttttgaaaacctttgacaaatcacgttttatgtgttttgaggaaaaataattatgtcattaatgtttttttgattggtgagtga |
6959680 |
T |
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| Q |
319 |
aaatttgatgggttgattaaactactataataccctttg |
357 |
Q |
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| T |
6959679 |
aaatttgatgggttgattaaactactataataccctttg |
6959641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 30749017 - 30749054
Alignment:
| Q |
261 |
tttatgtgttttgagggaaaataattatgtcattaatg |
298 |
Q |
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| T |
30749017 |
tttatgtgttttgagggaaattaattatgttattaatg |
30749054 |
T |
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