View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20140_low_8 (Length: 305)

Name: NF20140_low_8
Description: NF20140
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20140_low_8
NF20140_low_8
[»] chr5 (1 HSPs)
chr5 (16-298)||(39307729-39308011)
[»] chr7 (3 HSPs)
chr7 (94-134)||(42602533-42602573)
chr7 (95-153)||(31893901-31893959)
chr7 (92-129)||(16885556-16885593)
[»] chr1 (3 HSPs)
chr1 (92-150)||(49001975-49002033)
chr1 (93-134)||(6250107-6250148)
chr1 (22-90)||(33355834-33355900)
[»] chr2 (1 HSPs)
chr2 (92-151)||(36577094-36577153)
[»] chr4 (1 HSPs)
chr4 (91-129)||(16025019-16025057)
[»] chr6 (1 HSPs)
chr6 (91-132)||(30628900-30628941)
[»] chr3 (1 HSPs)
chr3 (230-266)||(28795301-28795337)


Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 39307729 - 39308011
Alignment:
Q  16 attatcattatctacacggaatttggttttgatgttcaaagcgttgagagttgagacacaaatgacatatacaaattagaaaattgctcttctcctatca 115  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||     
T  39307729 attatcattatctacacggaacttggttttgatgttcaaagcgttgagagttgagacacaaatgacatatacaaactagaaaattgctcttctcttatcc 39307828  T
Q  116 aaaattgttcactctcatatcaattgacgaaaatactccacatagacgttataccagcgtgattaagtcacgttctcaattcaatatgagttaactcata 215  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||    
T  39307829 aaaattgttcactctcataccaattgacgaaaatactccacatagacgttatacgagcgtgattaagtcacgttctcaatttaatgtgagttaactcata 39307928  T
Q  216 taagttgcagtagtggtgaaggattcagtatgagaattttaagaatcggatattacatgtttcaatttggaacttgatgatgt 298  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39307929 taagttgtagtagcggtgaaggatttagtatgagaattttaagaatcgaatattacatgtttcaatttggaacttgatgatgt 39308011  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 94 - 134
Target Start/End: Original strand, 42602533 - 42602573
Alignment:
Q  94 gaaaattgctcttctcctatcaaaaattgttcactctcata 134  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  42602533 gaaaattgctcttctcctaacaaaaattgttcactctcata 42602573  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 153
Target Start/End: Complemental strand, 31893959 - 31893901
Alignment:
Q  95 aaaattgctcttctcctatcaaaaattgttcactctcatatcaattgacgaaaatactc 153  Q
    |||||||||||||||| ||| ||||||| |||||||||||  || |||| |||||||||    
T  31893959 aaaattgctcttctcccatccaaaattgctcactctcatacaaactgacaaaaatactc 31893901  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 129
Target Start/End: Original strand, 16885556 - 16885593
Alignment:
Q  92 tagaaaattgctcttctcctatcaaaaattgttcactc 129  Q
    ||||||||||||||||||||||||||  ||||||||||    
T  16885556 tagaaaattgctcttctcctatcaaattttgttcactc 16885593  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 150
Target Start/End: Complemental strand, 49002033 - 49001975
Alignment:
Q  92 tagaaaattgctcttctcctatcaaaaattgttcactctcatatcaattgacgaaaata 150  Q
    ||||||||||||||||||||||  |||||||||||||||||  | ||||||| ||||||    
T  49002033 tagaaaattgctcttctcctatacaaaattgttcactctcacgtgaattgaccaaaata 49001975  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 134
Target Start/End: Complemental strand, 6250148 - 6250107
Alignment:
Q  93 agaaaattgctcttctcctatcaaaaattgttcactctcata 134  Q
    |||||||||||||||||||||| |||||||||| ||| ||||    
T  6250148 agaaaattgctcttctcctatccaaaattgttccctcccata 6250107  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 33355900 - 33355834
Alignment:
Q  22 attatctacacggaatttggttttgatgttcaaagcgttgagagttgagacacaaatgacatatacaaa 90  Q
    ||||| |||||| || |||||||  || ||||||||| |||||||||||||||  ||||||||||||||    
T  33355900 attatgtacacgtaacttggtttccattttcaaagcggtgagagttgagacac--atgacatatacaaa 33355834  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 36577094 - 36577153
Alignment:
Q  92 tagaaaattgctcttctcctatcaaaaattgttcactctcatatcaattgacgaaaatac 151  Q
    ||||||||||||||||||| ||| ||||||||| |||||||||  || | ||||||||||    
T  36577094 tagaaaattgctcttctcccatccaaaattgttgactctcatacaaagtaacgaaaatac 36577153  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 129
Target Start/End: Original strand, 16025019 - 16025057
Alignment:
Q  91 ttagaaaattgctcttctcctatcaaaaattgttcactc 129  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  16025019 ttagaaaattgctcttctccaatcaaaaattgctcactc 16025057  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 30628941 - 30628900
Alignment:
Q  91 ttagaaaattgctcttctcctatcaaaaattgttcactctca 132  Q
    |||||||||||||||||||| |  ||||||||||||||||||    
T  30628941 ttagaaaattgctcttctcccaataaaaattgttcactctca 30628900  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 28795301 - 28795337
Alignment:
Q  230 ggtgaaggattcagtatgagaattttaagaatcggat 266  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  28795301 ggtgaaagattcggtatgagaattttaagaatcggat 28795337  T

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