View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_high_16 (Length: 239)
Name: NF20141_high_16
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_high_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 16 - 239
Target Start/End: Complemental strand, 41047914 - 41047671
Alignment:
| Q |
16 |
cataatccataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagtttcaacccaccattacaaaata |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41047914 |
cataattcataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagtttcaacccaccattacaaaata |
41047815 |
T |
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| Q |
116 |
cagtagcaacaacacataattcatagtaataccaccattgtgaaattcaagctcaataaataacttgtctttaa--------------------gcttat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||| |
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| T |
41047814 |
cagtagcaacaacacataattcatagtaataccaccattgtgaaattcaagcttaataaataacttacctttaagcccttgaaaaacaccttacgcttat |
41047715 |
T |
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| Q |
196 |
ttcttcaattcttcccaaacttgtttcttccaaccaacacccaa |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41047714 |
ttcttcaattcttcccaaacttgtttcttccaaccaacacccaa |
41047671 |
T |
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Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 21892457 - 21892566
Alignment:
| Q |
16 |
cataatccataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagtttcaacccaccattacaaaata |
115 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21892457 |
cataattcataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagtttcaacccaccattacaaaata |
21892556 |
T |
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| Q |
116 |
cagtagcaac |
125 |
Q |
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|||||||||| |
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| T |
21892557 |
cagtagcaac |
21892566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 21892624 - 21892677
Alignment:
| Q |
186 |
ttaagcttatttcttcaattcttcccaaacttgtttcttccaaccaacacccaa |
239 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21892624 |
ttaagcttatttcttcaagtcttcccaaacttgtttcttccaaccaacacccaa |
21892677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 181
Target Start/End: Original strand, 21892565 - 21892600
Alignment:
| Q |
146 |
accaccattgtgaaattcaagctcaataaataactt |
181 |
Q |
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| T |
21892565 |
accaccattgtgaaattcaagcttaataaataactt |
21892600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 52040861 - 52040938
Alignment:
| Q |
16 |
cataatccataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagt |
93 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52040861 |
cataattcataatcagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagt |
52040938 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 13619848 - 13619771
Alignment:
| Q |
16 |
cataatccataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagt |
93 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
13619848 |
cataattcataatcagtccaatacactttttctaacaatctatccataaaattcagtcacggttcaaccataatcagt |
13619771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 1688532 - 1688609
Alignment:
| Q |
16 |
cataatccataaccagtccaatacactttttctaacaatctatccataaaattcagtcatggttcaaccataatcagt |
93 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1688532 |
cataattcataatcagtccaatacactttttctaacaatctatccataaaattcagccatggttcaaccataatcagt |
1688609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 32444335 - 32444377
Alignment:
| Q |
16 |
cataatccataaccagtccaatacactttttctaacaatctat |
58 |
Q |
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|||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
32444335 |
cataattcataatcagtccaatacactttttctaacaatctat |
32444377 |
T |
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