View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20141_high_17 (Length: 238)

Name: NF20141_high_17
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20141_high_17
NF20141_high_17
[»] chr3 (15 HSPs)
chr3 (13-99)||(18102518-18102604)
chr3 (13-99)||(18115019-18115106)
chr3 (19-99)||(19460589-19460670)
chr3 (166-223)||(18102394-18102451)
chr3 (179-223)||(19398676-19398720)
chr3 (16-78)||(19333072-19333135)
chr3 (169-223)||(18020977-18021031)
chr3 (13-79)||(18021952-18022019)
chr3 (13-99)||(18143356-18143445)
chr3 (19-99)||(18145914-18145995)
chr3 (16-79)||(19374768-19374832)
chr3 (166-223)||(19420704-19420761)
chr3 (175-223)||(18107374-18107422)
chr3 (16-79)||(19398818-19398882)
chr3 (20-60)||(19423701-19423741)
[»] chr6 (2 HSPs)
chr6 (13-99)||(13667708-13667795)
chr6 (29-95)||(13667837-13667904)


Alignment Details
Target: chr3 (Bit Score: 87; Significance: 8e-42; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 18102604 - 18102518
Alignment:
Q  13 cagagaagaagatctaattcaaatgaaattatgatttggtatgagatttaatgtgcttatataagatcttgagttatgggaaagctt 99  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18102604 cagagaagaagatctaattcaaatgaaattatgatttggtatgagatttaatgtgcttatataagatcttgagttatgggaaagctt 18102518  T

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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 18115106 - 18115019
Alignment:
Q  13 cagagaagaagatctaattcaaatgaaattatgatttggtatgaga-tttaatgtgcttatataagatcttgagttatgggaaagctt 99  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||    
T  18115106 cagagaagaagatgtaattcaaatgaaaatatgatttggtatgagattttaatgtgcttatataagatattgagttatgggaaagctt 18115019  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 19460670 - 19460589
Alignment:
Q  19 agaagatctaattcaaatgaaattatgatttggtatgagattt-aatgtgcttatataagatcttgagttatgggaaagctt 99  Q
    ||||||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  19460670 agaagatttaattcaaatgaaaatatgatttggtatgagattttaatgtgcttatataagatattgagttatgggaaagctt 19460589  T

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Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 18102451 - 18102394
Alignment:
Q  166 agctccaagactacaagactttgaataggcagggaagacttggaataatataatttct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18102451 agctccaagactacaagactttgaataggcagggaagacttggaataatataatttct 18102394  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 19398720 - 19398676
Alignment:
Q  179 caagactttgaataggcagggaagacttggaataatataatttct 223  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  19398720 caagactttgaataggcagggaagactttgaataatataatttct 19398676  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 19333135 - 19333072
Alignment:
Q  16 agaagaagatctaattcaaatgaaattatgatttggtatgaga-tttaatgtgcttatataaga 78  Q
    ||||||| ||||||||||||||  ||||||||||| ||||||| ||||||||||||||||||||    
T  19333135 agaagaatatctaattcaaatgggattatgatttgttatgagattttaatgtgcttatataaga 19333072  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 18021031 - 18020977
Alignment:
Q  169 tccaagactacaagactttgaataggcagggaagacttggaataatataatttct 223  Q
    ||||| |||||||||||||||| ||||| |||||||||||||| |||||||||||    
T  18021031 tccaaaactacaagactttgaaaaggcaaggaagacttggaattatataatttct 18020977  T

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Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 79
Target Start/End: Complemental strand, 18022019 - 18021952
Alignment:
Q  13 cagagaagaagatctaattcaaatgaaattatgatttggtatgaga-tttaatgtgcttatataagat 79  Q
    |||||||||||||||||||||| ||  ||||||||||| ||||||| |||| |||| |||||||||||    
T  18022019 cagagaagaagatctaattcaattggtattatgatttgttatgagattttactgtggttatataagat 18021952  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 99
Target Start/End: Complemental strand, 18143445 - 18143356
Alignment:
Q  13 cagagaagaagatctaattcaaatgaaattatgatttggtatgaga-tttaatgtg--cttatataagatcttgagttatgggaaagctt 99  Q
    |||||||||| |||||||||||||| |||||||| ||| ||||||| |||||||||   |||||||||||  || ||||||| |||||||    
T  18143445 cagagaagaatatctaattcaaatggaattatgagttgttatgagattttaatgtggttttatataagatgatgggttatggcaaagctt 18143356  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 18145995 - 18145914
Alignment:
Q  19 agaagatctaattcaaatgaaattatgatttggtatgaga-tttaatgtgcttatataagatcttgagttatgggaaagctt 99  Q
    |||||||||||||||||||  ||||||||||| ||| ||| ||||| ||| | |||||||||  || |||||||||||||||    
T  18145995 agaagatctaattcaaatggtattatgatttgttataagattttaaagtggtcatataagatgatgggttatgggaaagctt 18145914  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19374832 - 19374768
Alignment:
Q  16 agaagaagatctaattcaaatgaaattatgatttggtatgaga-tttaatgtgcttatataagat 79  Q
    |||||||  |||||||||||||  ||||||||||| ||||||| |||||||||||||||| ||||    
T  19374832 agaagaatgtctaattcaaatgggattatgatttgttatgagattttaatgtgcttatattagat 19374768  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 223
Target Start/End: Complemental strand, 19420761 - 19420704
Alignment:
Q  166 agctccaagactacaagactttgaataggcagggaagacttggaataatataatttct 223  Q
    |||||||| |||||||||||||||| | |||  ||||||||||||| ||| |||||||    
T  19420761 agctccaaaactacaagactttgaaaacgcatagaagacttggaattatagaatttct 19420704  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 18107422 - 18107374
Alignment:
Q  175 actacaagactttgaataggcagggaagacttggaataatataatttct 223  Q
    |||||||||||||||| ||||| | |||||||||||| ||| |||||||    
T  18107422 actacaagactttgaaaaggcaagaaagacttggaattatagaatttct 18107374  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 19398882 - 19398818
Alignment:
Q  16 agaagaagatctaattcaaatgaaattatgatttggtatgagattt-aatgtgcttatataagat 79  Q
    |||||||  ||||||||||||   ||||||||||  |||||||||| ||||||||||||||||||    
T  19398882 agaagaatgtctaattcaaattggattatgatttattatgagattttaatgtgcttatataagat 19398818  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 19423741 - 19423701
Alignment:
Q  20 gaagatctaattcaaatgaaattatgatttggtatgagatt 60  Q
    |||||||||||||||||||| |||||||||| || ||||||    
T  19423741 gaagatctaattcaaatgaatttatgatttgttaagagatt 19423701  T

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Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 13667708 - 13667795
Alignment:
Q  13 cagagaagaagatctaattcaaatgaaattatgatttggtatgagattt-aatgtgcttatataagatcttgagttatgggaaagctt 99  Q
    ||||||||||||||||||||||||    ||||||||||  ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  13667708 cagagaagaagatctaattcaaatatggttatgatttgtgatgagatttcaatgtgcttatataagatcttgggttatgggaaagctt 13667795  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 13667837 - 13667904
Alignment:
Q  29 attcaaatgaaattatgatttggtatgagattt-aatgtgcttatataagatcttgagttatgggaaa 95  Q
    |||||||||  ||||||||||| || ||||||| ||||||||||||||||||  || |||||||||||    
T  13667837 attcaaatgggattatgatttgttaagagattttaatgtgcttatataagatgatgggttatgggaaa 13667904  T

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