View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_high_6 (Length: 415)
Name: NF20141_high_6
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 34354230 - 34353841
Alignment:
| Q |
12 |
aagaacaccaataaaaaatacttcaaaatgaggctttagcctttcttaaaatgaaccaaaaacactgattttatcttttgcttccacctcttgataatcc |
111 |
Q |
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| T |
34354230 |
aagaacaccaataaaaaatacttcaaaatgaggctttagcctttcttaaaatgaaccaaaaacactgattttatcttttgcttccacgtcttgataatcc |
34354131 |
T |
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| Q |
112 |
accacttaccccttaagaatcgttctatatccaagatcacaatggccaaatgaaaaatctaactcttatgtatctttcaccactaatttcatacccaaat |
211 |
Q |
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| T |
34354130 |
accacataccccttaagaatcgttctatatccaagatcacaatggccaaatgaaaaatctaactcttgtgtatctttcaccactaatttcatacccaaat |
34354031 |
T |
|
| Q |
212 |
tgtagaaaatgagaagctccattatcgtgacaaactccaatcacgtaaacactttgtgtccatatacatcatatgaaaaaatacatgtaaaggataatga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34354030 |
tgtagaaaatgagaagctccattatcgtgacaaactccaatcacgtaaacactttgt-tccatatacatcatatgaaaaaatacatgtaaagggtaatga |
34353932 |
T |
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| Q |
312 |
gttgatatttgtcgttatgctcgaaataaaatgcacccaaaacatatccctctataatgtagagccaggcatatgtaagagaagaagaaaa |
402 |
Q |
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| T |
34353931 |
gttgatatttgtcgttatgctcgaaataaaatgcacacaaaacatatccctctataatgtagagccaggcatatgtaagagaagaagaaaa |
34353841 |
T |
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