View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20141_low_1 (Length: 764)

Name: NF20141_low_1
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20141_low_1
NF20141_low_1
[»] chr1 (1 HSPs)
chr1 (59-750)||(32444004-32444715)


Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 59 - 750
Target Start/End: Complemental strand, 32444715 - 32444004
Alignment:
Q  59 agaggaagaagaagaatatgatttttcaaaatgttaatgaaattgtcctt-------------ccccatatgagactactttgatgaacatttgnnnnnn 145  Q
    ||||||||||||| ||||||||||||||||||||||| ||||||||||||             |||||||||||||||||||||||||||||||          
T  32444715 agaggaagaagaataatatgatttttcaaaatgttaaagaaattgtccttaaataacttgagtccccatatgagactactttgatgaacatttgaataaa 32444616  T
Q  146 n-taatacgaaaacaagattccaacgaaaggagtattaagttatcattc-----aatcatggctccaacatttcaaatg---------ttgaagttgatc 230  Q
      |||||||||||||||||||||||||||||||||||||||||| ||||     |||||||||||||||||||||||||         ||||||||||||    
T  32444615 aataatacgaaaacaagattccaacgaaaggagtattaagttatgattcgcctcaatcatggctccaacatttcaaatgattcaaatgttgaagttgatc 32444516  T
Q  231 aaaaatgagataattgttggaagaaaatcagtgaaaaacttattacaagcatcaagacactaaaagggcgatgacacaaaataagttacgtctttttaaa 330  Q
    |||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||                |||||||||||||||||||    
T  32444515 aaaaatgagataattgttggaagagaatcagtgaaa--cttattacaagcatcaagacactaaaa----------------taagttacgtctttttaaa 32444434  T
Q  331 gtttattgggtgc---aaacaagttgtgact----acacagaa---atataggaacttcaagagcaatatcattttggttttttcacgtagtaatttatc 420  Q
    |||||||||||||   |||||||||||||||    ||||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32444433 gtttattgggtgctacaaacaagttgtgactgactacacagaagaaaaataggaacttcaagagcaatatcattttggttttttcacgtagtaatttatt 32444334  T
Q  421 tgaattttgtgtactaataatttgagatcaaccatcgatagctcttatgtttctgacgagaacattttcatgcataacctctcgttatcgttatcacacc 520  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  32444333 tgaattttgtgtactaataatttgagatcaaccatcgatagctcttatgtttctgacgagaacattttcacgcacaacctctcgttatcgttatcacacc 32444234  T
Q  521 tccgccactgtatccctttcaccacacaatctccttcatcttcttcagctcagcatcgaccttcacgctctcaaactcacccaacaatgtcactctcaaa 620  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  32444233 tccgccattgtatccctttcaccacacaatctccttcatcttcttcagctcagcatcgaccttcactctctcaaactcacccaacaatgtcactctcaaa 32444134  T
Q  621 tcctcacaaatttcttttcccaaaacgctttcctcatcaccaggctcatctctgcatacgccacatttggagactcgatcatgtcaaaactcgtttttga 720  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  32444133 tcctcacaaattgcttttcccaaaacgctttcctcaccaccaggctcatctctgcatacgccacatttggagactcgatcatgtcaaaactcgtctttga 32444034  T
Q  721 ctctgttcataccaaaaatgtttatctctg 750  Q
    ||||||||||||||||||||||||||||||    
T  32444033 ctctgttcataccaaaaatgtttatctctg 32444004  T

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