View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_10 (Length: 347)
Name: NF20141_low_10
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_10 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 347
Target Start/End: Original strand, 22046650 - 22046981
Alignment:
| Q |
17 |
aatattccagtgatctccaaactcagtccatgtccnnnnnnnnnnnnnnctcttaagaatcttgacatcaacttccatgctttctggtccatacatttcc |
116 |
Q |
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| T |
22046650 |
aatattccagtgatctccaaactcagtccatgacctttttcctttttttctcttaagaatcttgacatcaacttccatgccttctggtccatacatttcc |
22046749 |
T |
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| Q |
117 |
atagaatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgcaaatagaagcataaacgaaaaataaaatgaagaattgtgaatg |
216 |
Q |
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| T |
22046750 |
acataatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgcaaatagaagcataaacgaaaaataaaatgaagaattgtgaatg |
22046849 |
T |
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| Q |
217 |
taaaattaccagtttgagatataaaaactaactaaccaatctatacttctcagaataatactttgtaagtttcacttcaaaaggttttggttcaagtcca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
22046850 |
taaaattaccagtttgagatataaaaactaactaaccaatttatacttctcagcataatactttgtaagtttcacttcaaaaggttctagttcaagtcca |
22046949 |
T |
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| Q |
317 |
atat-ttgatatgtatgataatatggtaactt |
347 |
Q |
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|||| | ||||||||||||||||||||||||| |
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| T |
22046950 |
atatatcgatatgtatgataatatggtaactt |
22046981 |
T |
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