View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_13 (Length: 302)
Name: NF20141_low_13
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_13 |
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| [»] scaffold1183 (1 HSPs) |
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Alignment Details
Target: scaffold1183 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 1509 - 1792
Alignment:
| Q |
1 |
gcagagatttggggaagcagtgaatgagaatactcatagggttttcttgatggaagattttgagcacgttgattactttactcaaaagggtatcaagaaa |
100 |
Q |
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| T |
1509 |
gcagagattaggggaagcaatgaatgagaatactcatagggttttcttgatggaagattttgagcaagttgattactttactcaaaagggtatcaagaaa |
1608 |
T |
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| Q |
101 |
acaattgaaagtggaagtataacacttccttgtggtgaatgtgtaccactcaaggatgctattgtcattttcagttctgaaaaaacttctgcatattctg |
200 |
Q |
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| T |
1609 |
acaattgaaagtgcaagtataacacttccttctggtgaatctgtaccactcaagaatgctattgtcattttcagttctgaaaaaacttctgcatattctg |
1708 |
T |
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| Q |
201 |
aaaacatagggaaagacgatgttgataagtcggaggagaaaacattaagcttctccttcgatctcaacatagccatggaagttg |
284 |
Q |
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| T |
1709 |
aaaacatagtgaaaggcgatgttgataagtgggaggagaaaacattaagcttctccttcgatctcaacatagccatggaagttg |
1792 |
T |
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Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 40586532 - 40586355
Alignment:
| Q |
1 |
gcagagatttggggaagcagtgaatgagaatactcatagggttttcttgatggaagattt---tgagcacgttgattactttactcaaaagggtatcaag |
97 |
Q |
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|||||||||| | || ||||||||||||||| ||||||| || ||||| ||||||||||| ||| | |||||| ||||||||||||||||||||||| |
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| T |
40586532 |
gcagagattttgtgaggcagtgaatgagaatcctcatagagtgttcttcatggaagatttggaggaggaagttgatcactttactcaaaagggtatcaag |
40586433 |
T |
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| Q |
98 |
aaaacaattgaaagtggaagtataacacttccttgtggtgaatgtgtaccactcaaggatgctattgtcattttcagt |
175 |
Q |
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| T |
40586432 |
aaagcaattgaatgtggaagtataacaattcctggtggtgaatctgttcctctcaaggatgccattgtcattttcagt |
40586355 |
T |
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