View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_15 (Length: 257)
Name: NF20141_low_15
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 6881266 - 6881148
Alignment:
| Q |
1 |
tctctgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattatggttgcttgctccaacaaacta |
100 |
Q |
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| T |
6881266 |
tctccgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaagaattatggttgcttgctccaacaaacta |
6881167 |
T |
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| Q |
101 |
gtgtctactttcaaaaacc |
119 |
Q |
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| T |
6881166 |
gtgtctactttcaaaaacc |
6881148 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 6881091 - 6881005
Alignment:
| Q |
163 |
gaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcatctc |
249 |
Q |
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| T |
6881091 |
gaaaatgatctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcatctc |
6881005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 35458385 - 35458263
Alignment:
| Q |
1 |
tctctgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgca-aaaagttaaaaggattatggttgct---tgctccaacaa |
96 |
Q |
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| T |
35458385 |
tctccgtcctggtactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaaaattaaaaggattatagttgctcgctgctgcaacaa |
35458286 |
T |
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| Q |
97 |
actagtgtctactttcaaaaacc |
119 |
Q |
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| T |
35458285 |
actggtgtctattttcaaaaacc |
35458263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 249
Target Start/End: Complemental strand, 35458215 - 35458137
Alignment:
| Q |
171 |
tctatttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctcgttcatctc |
249 |
Q |
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| T |
35458215 |
tctatttcttcaagcttcaaaaaggttttctgcgaaatttattttctccgttagagggtttttctttctctttcatctc |
35458137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 3180694 - 3180758
Alignment:
| Q |
175 |
tttcttcaagcttcaaaaaggttttatccaaaatttattttctccatcagaaggtttttctttctc |
240 |
Q |
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| T |
3180694 |
tttctccaagattcaaagaggttttttgcaaaatttattttctccatc-gaaggttttcctttctc |
3180758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 3180543 - 3180585
Alignment:
| Q |
22 |
cctcttaatatttaattaattaaattcattaatagtgcaaaaa |
64 |
Q |
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| T |
3180543 |
cctctaaatatttaattaaattaattcattaatagtgcaaaaa |
3180585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 24214586 - 24214521
Alignment:
| Q |
13 |
tactcaaatcctcttaatatttaattaattaaattcattaatagtgcaaaaagttaaaaggattat |
78 |
Q |
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| T |
24214586 |
tactcaaaatctcttaatatttaattagttatattaatcaatagtgcaaaaaagtaaaaagattat |
24214521 |
T |
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