View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_2 (Length: 623)
Name: NF20141_low_2
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 9 - 608
Target Start/End: Original strand, 36951434 - 36952040
Alignment:
| Q |
9 |
caaaggtgacaacaacatacatctaccatgttgaataaactctacaatcaataaataattaacatgattaagctaattctagtatgcaataaacaacnnn |
108 |
Q |
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| T |
36951434 |
caaaggtgacaacaacatacatctaccatgttgaataaactatacaatcaataaataaataacatgattaagctaattctagtatgtaataaacaacata |
36951533 |
T |
|
| Q |
109 |
nnnnnncttaccaaaaggaaacaaagtgacagcaacatacatctaccaataccatgctgaataatccatactcaaataattttctagctagaacaggtac |
208 |
Q |
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| T |
36951534 |
aaaaaacttaccaaaaggaaacaaagtgacagcaacatacatctaccaataccatgctgaataatccatactcaaataattttctagctagaacaggtac |
36951633 |
T |
|
| Q |
209 |
tcaaaactttttatcatttttagaagnnnnnnnnttctttcaaattataannnnnnnnaagaaagttgtgacaaacgtgctctaattctaatnnnnnnnn |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36951634 |
tcaaaactttttatcatttttagaagaaaaaaaattctttcaaattataattttttttaagaaagttgtgacaaacgtgctctaattctaataaaaaaa- |
36951732 |
T |
|
| Q |
309 |
ttgttacccagtgaaagaaccgcatagaaacgcgctttcacctccatgaggccaaacaaacaagtgaggaatggaaaaaggttgaggataaggtactggt |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36951733 |
ttgttacccagtgaaagaaccgcatagaaacgcgctttcacctccatgaggccaaacaaacaagtgaggaatggaaaaaggttgaggatcaggtactggt |
36951832 |
T |
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| Q |
409 |
acatcactactacttccatttcctcctctacctgcagctaatgaaccagacatttcaatctcaaatcaca--------aacaattgaagcaacctttgat |
500 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36951833 |
acatcactgctacttccatttcctcctctacctgcagctaatgaaccagacatttcaatctcaaatcacaaacaactgaacaattgaagcaacctttgat |
36951932 |
T |
|
| Q |
501 |
tactaggtagtagcaagaatttaaatgctttgtaaaataatgtagcaaatagtgtgacaaagttcatatttatattaatttaggtaggagaaagaaaacg |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36951933 |
tactaggtagtagcaagaatttaaatgctttgtaaaataatgtagcaaatagtgtgacaaagttcatatttatattaatttaggtaggagaaagaaaacg |
36952032 |
T |
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| Q |
601 |
taaaaagt |
608 |
Q |
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| T |
36952033 |
taaaaagt |
36952040 |
T |
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