View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_3 (Length: 521)
Name: NF20141_low_3
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 2528543 - 2528838
Alignment:
| Q |
1 |
agacaggaaaatgaaacaaaacaaacatgtcagacaaaaaattcattcaatcaagctggtaaaatatttatgaaattaaaaatcatcatgtttctcatag |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528543 |
agacaggaaaatgaaacaaaacaaacatgtcagacaaaaaattgattcaatcaagctggtaaaatatttatgaaattaaaaatcatcatgtttctcatag |
2528642 |
T |
|
| Q |
101 |
agaaattaacaaaattcttccatttctctgcatatacatacaaaagcaaaattcagaaaactgatcccttgcatgcaggctcaaagacactcacaaatct |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2528643 |
agaaattaacaaaattcttccatttctctgcatatacatacaaaagcaaaattcagaaaactgatcccttgcatgcaggctcagagacactcacaaatct |
2528742 |
T |
|
| Q |
201 |
caactgaattccaattgtgaaatcctaaaccctacattcaaaaaccacaaaagaccctttgaaatttctacaccaaaacccctttgatttgaacaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528743 |
caactgaattccaattgtgaaatcctaaaccctacattcaaaaaccacaaaagaccctttgaaatttctacaccaaaacccctttgatttgaacaa |
2528838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 383 - 504
Target Start/End: Original strand, 2528920 - 2529041
Alignment:
| Q |
383 |
cccatttgaaatattcatgcaaccaattttgtgacattgttgaaacacaagaaaacatcatcataacaaaagggtgagtgagatcaaacataccaaccca |
482 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2528920 |
cccatttgaaatattcatgcaaccaattttgtgacattgttgaaacacaagaaaacatcatcataacaaaagggtgagtgagatcaaacataccaaccca |
2529019 |
T |
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| Q |
483 |
acacaaaacctgcatttgtttc |
504 |
Q |
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|||||||||||||||||||||| |
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| T |
2529020 |
acacaaaacctgcatttgtttc |
2529041 |
T |
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