View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_4 (Length: 496)
Name: NF20141_low_4
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Original strand, 37095526 - 37095963
Alignment:
| Q |
11 |
aagaatatggttattgttgtgagtcaaagatacacttgaatgtgagagtcacacacttcgtcacctcatttaccacaagagcaacgaatctgtcagaatc |
110 |
Q |
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| T |
37095526 |
aagaatatggt-attgttgtgagtcaaagaaacacatgaatgtgagagtcacacacttcgtcacctcatttaccacaagagcaacgaatctgtcagaatc |
37095624 |
T |
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| Q |
111 |
cagaacaaaaatcacaaacattttttcctaagaagagacataaaagtgctgtataagaatagttctcattgatgacaatttgtttatttatacctagctt |
210 |
Q |
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| T |
37095625 |
cagaacaaaaatcacaaacattttttcctaagaagagacataaaagtgctgtataagaatagttctcattgatgacaatttgtttatttatacctagctt |
37095724 |
T |
|
| Q |
211 |
gaacaaacatgtggtccaaatggttttaccgttgccaaaaatataacatacgagttcaacaataggtccacatcctccaaattatacatccaaactgcat |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||||| || || ||||||||||||||||||||| |
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| T |
37095725 |
gaacaaacatgtggtccaaatggttttaccgttgccaaaaaaataacatacgagttcaaccat-ggtccacaaccaccgaattatacatccaaactgcat |
37095823 |
T |
|
| Q |
311 |
gttttataaagaactgttttattgttgctcaaattagatagagagatatatcacctaaagaagacaaacagcttttatgacaaaaacaatgcatttaatt |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37095824 |
gttttataaagaactgttttattgttgctcaaattagatagagagatatatcacctaaagaagacaaacagcttttatgaaaaaaacaatgcatttaatt |
37095923 |
T |
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| Q |
411 |
atcatcgttccttaacctgggagatgcatgtgaaagaaag |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
37095924 |
atcatcgttccttaacctgggagatgcatgtgaaagaaag |
37095963 |
T |
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