View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_5 (Length: 464)
Name: NF20141_low_5
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 6881702 - 6881263
Alignment:
| Q |
18 |
ataattagattgagtttgagaagaaattatgtggttggcttaaatgtattggctaaatttgacaacaaatcttaatatgtattcagtatccaaatcaatg |
117 |
Q |
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| T |
6881702 |
ataattagattgagtttgagaagaaattatgtggttggcttaaatgtattggctaaatttgacaacaaatcttaatatgtattcagtatccaaatcaatg |
6881603 |
T |
|
| Q |
118 |
atag-catatagactatggttgccttaaagttgatagtaaacttgttcaattctgatgtgcaattcagtactgagaattcaggttcaactgtaaccgaat |
216 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6881602 |
atagacatatagactatggttgccttaaagttgatagtaaacttgttcaattctgatgtgcaattcagtactgagaattcaggttcaaccgtaaccgaat |
6881503 |
T |
|
| Q |
217 |
cctgtatttaccaaactgacatataaacaatctctctttattctactctgctcataatctcttttactcaagaatactatggagaattctctgtggcagc |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6881502 |
tctgtatttaccaaactgacatataaacaatctctctttattctactctgctcataatctcttttactcaagaatactatggagaattctctgtggcagc |
6881403 |
T |
|
| Q |
317 |
nnnnnnnnnnnnnnnntcattt-cacaattgcaatgactgaattgacaatgagaacaaaccgaaaatctaactaagcatacaaacaggtcacaaaaattg |
415 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
6881402 |
aaaataaaaataaaaatcatttccacaattgcaatgactgaattgacaatgagaacaaaccgaaaatctaactaagcatacaaacagttcacaaaaattg |
6881303 |
T |
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| Q |
416 |
taaatgtgcctccatcgttaagagaactaggaaatatctc |
455 |
Q |
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| T |
6881302 |
taaatgtgcctccatcattaagagaactaggaaatatctc |
6881263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 369 - 419
Target Start/End: Complemental strand, 6845765 - 6845715
Alignment:
| Q |
369 |
aacaaaccgaaaatctaactaagcatacaaacaggtcacaaaaattgtaaa |
419 |
Q |
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||||||| ||||| |||||||||||||||||||| |||| || |||||||| |
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| T |
6845765 |
aacaaactgaaaacctaactaagcatacaaacagttcacgaagattgtaaa |
6845715 |
T |
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