View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20141_low_6 (Length: 419)

Name: NF20141_low_6
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20141_low_6
NF20141_low_6
[»] chr5 (5 HSPs)
chr5 (241-357)||(21849541-21849657)
chr5 (241-357)||(21857455-21857571)
chr5 (262-403)||(42784369-42784513)
chr5 (324-403)||(5520597-5520679)
chr5 (342-394)||(15597591-15597646)
[»] chr3 (4 HSPs)
chr3 (342-403)||(5706714-5706775)
chr3 (324-403)||(28059463-28059545)
chr3 (324-403)||(28069888-28069970)
chr3 (258-390)||(29755041-29755178)
[»] chr7 (4 HSPs)
chr7 (310-394)||(36265574-36265661)
chr7 (309-404)||(30943317-30943415)
chr7 (342-394)||(28802534-28802589)
chr7 (342-390)||(19670504-19670555)
[»] chr6 (4 HSPs)
chr6 (306-403)||(27649978-27650071)
chr6 (341-403)||(27526189-27526254)
chr6 (324-403)||(22012893-22012975)
chr6 (342-394)||(13143003-13143058)
[»] chr2 (4 HSPs)
chr2 (324-403)||(2587156-2587238)
chr2 (324-403)||(44314820-44314902)
chr2 (324-403)||(44322999-44323081)
chr2 (331-394)||(10414813-10414879)
[»] chr1 (4 HSPs)
chr1 (324-403)||(14649210-14649292)
chr1 (324-403)||(14659000-14659082)
chr1 (344-403)||(42565065-42565127)
chr1 (331-394)||(29290199-29290265)
[»] chr8 (2 HSPs)
chr8 (356-403)||(18981378-18981425)
chr8 (341-395)||(26918450-26918507)
[»] chr4 (1 HSPs)
chr4 (341-403)||(54352982-54353047)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 21849541 - 21849657
Alignment:
Q  241 acaagagctgaaatcaatgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatt 340  Q
    ||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||    
T  21849541 acaagagctgaaattgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatt 21849640  T
Q  341 tgtgagttgatgacgat 357  Q
    ||||||||||| |||||    
T  21849641 tgtgagttgatcacgat 21849657  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 241 - 357
Target Start/End: Original strand, 21857455 - 21857571
Alignment:
Q  241 acaagagctgaaatcaatgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatt 340  Q
    ||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||    
T  21857455 acaagagctgaaattgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatt 21857554  T
Q  341 tgtgagttgatgacgat 357  Q
    ||||||||||| |||||    
T  21857555 tgtgagttgatcacgat 21857571  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 403
Target Start/End: Original strand, 42784369 - 42784513
Alignment:
Q  262 tgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatttgtgagttgatgacgat---t 358  Q
    ||||||||||||||||||   ||| ||| |||||| ||   |||||||||  |||||||  |||||   ||||||||| |||||||||||||||||   |    
T  42784369 tgatgttcagattcggtggaaattactccggtggtcattcagaaaggcatcactaggaattgagttctttcgtcatatctgtgagttgatgacgatcatt 42784468  T
Q  359 atcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||||||||||||||||| |||||||||||||||||| |||||    
T  42784469 atcacttattttaattatcgctattattgatattttggtgatttt 42784513  T

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Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 5520679 - 5520597
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| || |||||  |||||||||||||||||   ||||||||||||||||||| | |||||||||||||||||| |||||    
T  5520679 agttgattcatcataactgtgagttgatgacgatcattatcacttattttaattatagctattattgatattttggtgatttt 5520597  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 15597591 - 15597646
Alignment:
Q  342 gtgagttgatgacgat---tatcacttattttaattatcgttattattgatatttt 394  Q
    ||||||||||||||||   ||||||||||||| |||||| |||||||| |||||||    
T  15597591 gtgagttgatgacgatcattatcacttattttcattatctttattattaatatttt 15597646  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 342 - 403
Target Start/End: Complemental strand, 5706775 - 5706714
Alignment:
Q  342 gtgagttgatgacgattatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5706775 gtgagttgatgacgattatcacttattttaattatcgttattattgatattttggttatttt 5706714  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 28059545 - 28059463
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| |||  ||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |||||    
T  28059545 agttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgatttt 28059463  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 28069970 - 28069888
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| |||  ||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |||||    
T  28069970 agttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgatttt 28069888  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 258 - 390
Target Start/End: Complemental strand, 29755178 - 29755041
Alignment:
Q  258 tgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatat--ttgtgagttgatgacg 355  Q
    |||||||||||||||||||||||  |||||||| ||| |||| | | ||| ||||| || ||||  |||||| |||||||||  |||||||||||| |||    
T  29755178 tgtatgatgttcagattcggtgaaaattgctctagtgattattacggaagacattgttaagaacatagttgattcgtcatatagttgtgagttgatcacg 29755079  T
Q  356 ---attatcacttattttaattatcgttattattgata 390  Q
       |||||||  |||||| |||||  ||||||||||||    
T  29755078 atcattatcatatattttgattatttttattattgata 29755041  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 310 - 394
Target Start/End: Complemental strand, 36265661 - 36265574
Alignment:
Q  310 attgctaggaacggagttgactcgtcatatttgtgagttgatgacg---attatcacttattttaattatcgttattattgatatttt 394  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |   |||||||||||||||  ||||||||||||||||||||||    
T  36265661 attgctaggaatggagttgactcgtcatagttgtgagttgatgaggatcattatcacttattttccttatcgttattattgatatttt 36265574  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 404
Target Start/End: Original strand, 30943317 - 30943415
Alignment:
Q  309 cattgctaggaacggagttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttattttt 404  Q
    ||||| |||||| ||| ||||||| ||||| || ||||||||| || ||   |||||  |||||||||||| |||||||||||||||||| ||||||||    
T  30943317 cattgttaggaatggatttgactcttcataattatgagttgataacaatcattatcatatattttaattattgttattattgatattttgcttattttt 30943415  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 394
Target Start/End: Original strand, 28802534 - 28802589
Alignment:
Q  342 gtgagttgatgacgat---tatcacttattttaattatcgttattattgatatttt 394  Q
    ||||||||||||||||   |||||| |||||| |||||||||||||||||||||||    
T  28802534 gtgagttgatgacgatcattatcacatattttcattatcgttattattgatatttt 28802589  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 390
Target Start/End: Complemental strand, 19670555 - 19670504
Alignment:
Q  342 gtgagttgatgacgat---tatcacttattttaattatcgttattattgata 390  Q
    ||||||||||||||||   |||||| |||||||||||| |||||||||||||    
T  19670555 gtgagttgatgacgatcaatatcacatattttaattattgttattattgata 19670504  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 306 - 403
Target Start/End: Original strand, 27649978 - 27650071
Alignment:
Q  306 aggcattgctaggaacggagttgactcgtcatatttgtgagttgatgacgattatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    ||||||||||||||| | | |||| | | |||| ||||||||||||||||||     ||||||||||||||||||||||||||||||||||| |||||    
T  27649978 aggcattgctaggaatgaaattgattagccatagttgtgagttgatgacgatc----cttattttaattatcgttattattgatattttggtaatttt 27650071  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 27526189 - 27526254
Alignment:
Q  341 tgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |||||    
T  27526189 tgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtaatttt 27526254  T

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Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 22012893 - 22012975
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||| || |||||    
T  22012893 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatatttttgtgatttt 22012975  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 13143058 - 13143003
Alignment:
Q  342 gtgagttgatgacgat---tatcacttattttaattatcgttattattgatatttt 394  Q
    ||||||||||||||||   |||| |||||||| | |||||||||||||||||||||    
T  13143058 gtgagttgatgacgatcattatcgcttattttcaatatcgttattattgatatttt 13143003  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 2587156 - 2587238
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||||||  |||||||||||||||||   ||||||||||||||||||||  |||||||||||||||||| |||||    
T  2587156 agttgattcgtcataactgtgagttgatgacgatcattatcacttattttaattatctctattattgatattttggtgatttt 2587238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 44314820 - 44314902
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||| || |||||    
T  44314820 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatatttttgtgatttt 44314902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 44322999 - 44323081
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||| || |||||    
T  44322999 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatatttttgtgatttt 44323081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 394
Target Start/End: Original strand, 10414813 - 10414879
Alignment:
Q  331 tcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatatttt 394  Q
    ||||||||  |||||||||||||||||   |||| |||||||| | |||||||||||||| ||||||    
T  10414813 tcgtcataactgtgagttgatgacgatcattatcgcttattttcaatatcgttattattgctatttt 10414879  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 14649210 - 14649292
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |||||    
T  14649210 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgatttt 14649292  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 14659000 - 14659082
Alignment:
Q  324 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| |||||||||||||||||| |||||    
T  14659000 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattttggtgatttt 14659082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 344 - 403
Target Start/End: Original strand, 42565065 - 42565127
Alignment:
Q  344 gagttgatgacgatta---tcacttattttaattatcgttattattgatattttggttatttt 403  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||| ||||||||| |||||    
T  42565065 gagttgatgacgattattatcacttattttaattatcgctattattggtattttggtgatttt 42565127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 331 - 394
Target Start/End: Complemental strand, 29290265 - 29290199
Alignment:
Q  331 tcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatatttt 394  Q
    ||||||||  |||||||||||||||||   |||| |||||||| | |||||||||||||| ||||||    
T  29290265 tcgtcataactgtgagttgatgacgatcattatcgcttattttcaatatcgttattattgctatttt 29290199  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 403
Target Start/End: Original strand, 18981378 - 18981425
Alignment:
Q  356 attatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||    
T  18981378 attatcacttattttaattatcgctattattgatattttggtgatttt 18981425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 26918507 - 26918450
Alignment:
Q  341 tgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttg 395  Q
    |||||||||||||||||   ||||| |||||||||||||| |||||||||||||||||    
T  26918507 tgtgagttgatgacgatcattatcaattattttaattatcattattattgatattttg 26918450  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 341 - 403
Target Start/End: Complemental strand, 54353047 - 54352982
Alignment:
Q  341 tgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattttggttatttt 403  Q
    |||||||||||||||||   ||||||||||||||||||| | |||||||||||||||||| |||||    
T  54353047 tgtgagttgatgacgatcattatcacttattttaattatagctattattgatattttggtgatttt 54352982  T

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