View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20141_low_8 (Length: 364)

Name: NF20141_low_8
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20141_low_8
NF20141_low_8
[»] chr3 (7 HSPs)
chr3 (16-348)||(28521583-28521917)
chr3 (72-348)||(28050488-28050764)
chr3 (64-250)||(27913470-27913654)
chr3 (76-318)||(28001344-28001571)
chr3 (284-337)||(28146757-28146810)
chr3 (100-184)||(27461854-27461937)
chr3 (291-349)||(45483744-45483802)
[»] scaffold0257 (2 HSPs)
scaffold0257 (64-171)||(11038-11145)
scaffold0257 (160-340)||(16301-16483)
[»] chr2 (6 HSPs)
chr2 (291-349)||(19865994-19866052)
chr2 (291-349)||(19870895-19870953)
chr2 (291-349)||(19875796-19875854)
chr2 (281-347)||(33226597-33226663)
chr2 (200-250)||(17508848-17508898)
chr2 (291-348)||(21017197-21017254)
[»] chr6 (1 HSPs)
chr6 (290-347)||(20902845-20902902)
[»] chr4 (1 HSPs)
chr4 (281-348)||(20447733-20447800)
[»] chr8 (2 HSPs)
chr8 (291-345)||(33828335-33828389)
chr8 (290-347)||(42664127-42664184)
[»] chr1 (1 HSPs)
chr1 (285-347)||(41336000-41336062)


Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 348
Target Start/End: Complemental strand, 28521917 - 28521583
Alignment:
Q  16 atcatttttcgtcaactcctggttctttttaacagactttctgttcctccattaccacctacttatcttgaaaaattacttctttgaactccagtatgac 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28521917 atcatttttcgtcaactcctggttctttttaacaaactttctgttcctccattaccacctacttatcttgaaaaattacttctttgaactccagtatgac 28521818  T
Q  116 ccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacgaatgatttctaggtttgaaagctaaatattatatttcagt 215  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  28521817 ccaaaatttttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacgaatgatttctaggtgtgaaagctaaatattatatttcagt 28521718  T
Q  216 actgaatattgtacaatcactaatgtgtttat--atattaaattttaaacttattatactttgatccaacgacaaggaagaaaataaaaactaacaatag 313  Q
    | |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  28521717 attgaatattgtacaaccactaatgtgtttatatatattaaattttaaacttattatactttgatccaacgagaaggaagaaaataaaaactaacaatag 28521618  T
Q  314 ttatctacaaaaattgagctctatgaagttttaag 348  Q
    ||||||||||||||||||||||||||| |||||||    
T  28521617 ttatctacaaaaattgagctctatgaaattttaag 28521583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 72 - 348
Target Start/End: Original strand, 28050488 - 28050764
Alignment:
Q  72 acctacttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctata 171  Q
    |||||||| |||||| ||||||||||||| |||| || |||||||| |||| |||||||| |||| |||||||| ||  || ||||||||||||||||||    
T  28050488 acctacttctcttgacaaattacttctttaaacttcaatatgaccctaaaaatttggacgcaagatggtgtgaggaa--gaatgaaagaagtcttctata 28050585  T
Q  172 tacga---atgatttctaggtttgaaagctaaatattatatttcagtact-gaatattgtacaatcactaatgtgtttatatattaaattttaaacttat 267  Q
    ||  |   ||||||| ||||| ||||| |||| |||||||||| || | | ||||| |  |||||| |||||||||||||||| |||||||||||||||     
T  28050586 tattattaatgatttttaggtatgaaaactaagtattatattttaggaattgaataat--acaatcgctaatgtgtttatatagtaaattttaaacttac 28050683  T
Q  268 tatactttgatccaacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    ||||| || ||  ||||| |||||||||||||||| ||| ||||||||||||| |||| ||||| ||||||||| ||||||    
T  28050684 tatacattaataaaacgataaggaagaaaataaaagctaccaatagttatctataaaagttgagttctatgaagatttaag 28050764  T

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Target: chr3; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 64 - 250
Target Start/End: Original strand, 27913470 - 27913654
Alignment:
Q  64 ccattaccacctacttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagt 163  Q
    |||||| ||||||||| |||||| ||||||||||||||||||  | ||| ||||||||| ||||||||   ||||||||||  |||||||||||| ||||    
T  27913470 ccattaacacctacttctcttgacaaattacttctttgaactttaatatcacccaaaaaatttggacg---gaaggtgtgaagaatagagtgaaaaaagt 27913566  T
Q  164 cttctatatacgaatgatttctaggtttgaaagctaaatattatatttca-gtactgaatattgtacaatcactaatgtgtttatata 250  Q
    |||| ||||| |||| |||||||||| |||||  | ||||||||| |||| ||| |||||| ||||||| ||||||||||||||||||    
T  27913567 cttcgatatatgaattatttctaggtgtgaaaattgaatattatacttcaggtaatgaataatgtacaaccactaatgtgtttatata 27913654  T

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Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 76 - 318
Target Start/End: Original strand, 28001344 - 28001571
Alignment:
Q  76 acttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacg 175  Q
    |||| |||||| ||||||||| ||||||||||| ||||||||||||| ||   || |||||||||||| | |||||| |||||||||||| ||||||| |    
T  28001344 acttctcttgacaaattacttatttgaactccaatatgacccaaaaaattcaaacagaagaaggtgtggggaatagattgaaagaagtctactatatatg 28001443  T
Q  176 aatgatttctaggtttgaaagctaaatattatatttca-gtactgaatattgtacaatcactaatgtgtttatatattaaattttaaacttattatactt 274  Q
    |||||||||||||| ||||| |||||||| |||||||| |||||||||| | |||                ||| | |||||||||||||||||||||||    
T  28001444 aatgatttctaggtgtgaaaactaaatatcatatttcaggtactgaataatttac----------------atagagtaaattttaaacttattatactt 28001527  T
Q  275 tgatccaacgacaaggaagaaaataaaaactaacaatagttatc 318  Q
    | ||  || ||||||||||||||||||| |||||||| ||||||    
T  28001528 tcatgaaatgacaaggaagaaaataaaagctaacaatggttatc 28001571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 284 - 337
Target Start/End: Original strand, 28146757 - 28146810
Alignment:
Q  284 gacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctat 337  Q
    ||||||||||||||||||| ||||||||||||||||| |||| ||||| |||||    
T  28146757 gacaaggaagaaaataaaagctaacaatagttatctataaaatttgagttctat 28146810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 100 - 184
Target Start/End: Complemental strand, 27461937 - 27461854
Alignment:
Q  100 tgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagtcttctatatacgaatgatttc 184  Q
    ||||||||| ||| |||| ||||||| ||||||||||||||||| | ||| ||||||||| |||||| | |||| ||||||||||    
T  27461937 tgaactccaatatcaccctaaaattt-ggacggaagaaggtgtgtggaatggagtgaaagtagtcttttttatatgaatgatttc 27461854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Original strand, 45483744 - 45483802
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagt 349  Q
    |||||||||||| ||||||||| |||| || |||| ||| |||||||||||||||||||    
T  45483744 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaagt 45483802  T

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Target: scaffold0257 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 11038 - 11145
Alignment:
Q  64 ccattaccacctacttatcttgaaaaattacttctttgaactccagtatgacccaaaaattttggacggaagaaggtgtgagcaatagagtgaaagaagt 163  Q
    |||||| ||| || || ||||||  |||||||||||||||||||| ||||| | ||||||||||||| |||||| ||||  |||||||||||||||||||    
T  11038 ccattaacacatatttctcttgacgaattacttctttgaactccaatatgatcgaaaaattttggacagaagaaagtgtaggcaatagagtgaaagaagt 11137  T
Q  164 cttctata 171  Q
    ||||||||    
T  11138 cttctata 11145  T

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Target: scaffold0257; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 160 - 340
Target Start/End: Original strand, 16301 - 16483
Alignment:
Q  160 aagtcttctatatacgaatgatttctaggtttgaaagctaaatattatatttcagtactgaatattgtacaatcactaatgtgt---ttatatattaaat 256  Q
    |||| |||||| || ||||||||||||||| ||||| ||| ||||||||||   ||||| |||| |||||   |||||||||||   ||||||| |||||    
T  16301 aagtattctatgtatgaatgatttctaggtgtgaaaactacatattatattag-gtactcaataatgtaccgccactaatgtgtaatttatatagtaaat 16399  T
Q  257 tttaaacttattatactttgatccaacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaa 340  Q
    ||| |||||  ||  |||| |   |||| ||||||||||||||||| |||| |||||||||||| |||| ||||| | ||||||    
T  16400 tttgaacttgctaatctttaacgaaacggcaaggaagaaaataaaagctaataatagttatctataaaagttgagatgtatgaa 16483  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 19866052 - 19865994
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagt 349  Q
    |||||||||||| ||||||||| |||| || |||| ||| |||||||||||||||||||    
T  19866052 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaagt 19865994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 19870953 - 19870895
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagt 349  Q
    |||||||||||| ||||||||| |||| || |||| ||| |||||||||||||||||||    
T  19870953 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaagt 19870895  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 291 - 349
Target Start/End: Complemental strand, 19875854 - 19875796
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaagt 349  Q
    |||||||||||| ||||||||| |||| || |||| ||| |||||||||||||||||||    
T  19875854 aagaaaataaaatctaacaataattatttataaaagttgtgctctatgaagttttaagt 19875796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 281 - 347
Target Start/End: Original strand, 33226597 - 33226663
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaa 347  Q
    |||||||| ||||||||||||| ||||||||| |||| || |||| |||  ||||||||||||||||    
T  33226597 aacgacaatgaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaa 33226663  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 250
Target Start/End: Complemental strand, 17508898 - 17508848
Alignment:
Q  200 aatattatatttcagtactgaatattgtacaatcactaatgtgtttatata 250  Q
    ||||||||||||||| | | |||| ||||||| ||||||||||||||||||    
T  17508898 aatattatatttcagaaataaataatgtacaaccactaatgtgtttatata 17508848  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 348
Target Start/End: Original strand, 21017197 - 21017254
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    |||||||||||| |||||||||||||| || |||| ||||| | |||| |||||||||    
T  21017197 aagaaaataaaagctaacaatagttatttataaaagttgagatatatggagttttaag 21017254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 290 - 347
Target Start/End: Complemental strand, 20902902 - 20902845
Alignment:
Q  290 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaa 347  Q
    ||||||||||||| ||||||||| |||| || |||| |||| ||||||||||||||||    
T  20902902 gaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaagttttaa 20902845  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 348
Target Start/End: Original strand, 20447733 - 20447800
Alignment:
Q  281 aacgacaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaag 348  Q
    |||||||| ||||||| ||||| ||||||||| |||| || |||| ||||||||||||| ||| ||||    
T  20447733 aacgacaacgaagaaactaaaatctaacaataattatttataaaagttgagctctatgatgttgtaag 20447800  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 345
Target Start/End: Complemental strand, 33828389 - 33828335
Alignment:
Q  291 aagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagtttt 345  Q
    |||||||||||| |||||||||||||| || |||| |||||||||| | ||||||    
T  33828389 aagaaaataaaagctaacaatagttatttataaaagttgagctctaaggagtttt 33828335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 347
Target Start/End: Original strand, 42664127 - 42664184
Alignment:
Q  290 gaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaa 347  Q
    ||||||||||||| ||||||||| |||| || |||| |||  ||||||||||||||||    
T  42664127 gaagaaaataaaatctaacaataattatttataaaagttgtactctatgaagttttaa 42664184  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 347
Target Start/End: Complemental strand, 41336062 - 41336000
Alignment:
Q  285 acaaggaagaaaataaaaactaacaatagttatctacaaaaattgagctctatgaagttttaa 347  Q
    |||| ||||||||||||| ||||||||| |||| || |||| |||| ||||||||| ||||||    
T  41336062 acaacgaagaaaataaaatctaacaataattatgtataaaagttgaactctatgaacttttaa 41336000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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