View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20141_low_9 (Length: 358)
Name: NF20141_low_9
Description: NF20141
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20141_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 16 - 341
Target Start/End: Original strand, 31560878 - 31561203
Alignment:
| Q |
16 |
tataaagtactatagaaggagaaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc |
115 |
Q |
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| T |
31560878 |
tataaagtactatagaaggagtaggaaatgaacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttc |
31560977 |
T |
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| Q |
116 |
aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggatttt |
215 |
Q |
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| T |
31560978 |
aacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgcttt-ttttttctccgtcattactggatttt |
31561076 |
T |
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| Q |
216 |
ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcac |
315 |
Q |
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| T |
31561077 |
ggcagtgtcaattactcaatatcagttacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaacttgaacaatcac |
31561176 |
T |
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| Q |
316 |
ata-tctctagactttgcggattcatc |
341 |
Q |
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| T |
31561177 |
atattctctagactttgcggattcatc |
31561203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 51 - 302
Target Start/End: Original strand, 31558936 - 31559181
Alignment:
| Q |
51 |
gaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataattgaa |
150 |
Q |
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| T |
31558936 |
gaataatatagaagtaggttgtatcattgttcaagctacatatatatttttaggactcatttttcattttatgtcaaatgtatctctgtagataattgaa |
31559035 |
T |
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| Q |
151 |
tcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagttacagccct |
250 |
Q |
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| T |
31559036 |
ttggccttctattcttgaattatatttgt-----cttta-tttttccccatcattactggattttggctgtgcaaattattaaatatcagttacagccct |
31559129 |
T |
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| Q |
251 |
ccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaa |
302 |
Q |
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| T |
31559130 |
ccaacagaagacaatattcactgtcgcggatctatcctcagcctatctacaa |
31559181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 107 - 330
Target Start/End: Complemental strand, 31877754 - 31877529
Alignment:
| Q |
107 |
acatttttcaacttatgtcaattgtatctccgtagataattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcatta |
206 |
Q |
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| T |
31877754 |
acatttttcatcttatgtcaattgtatctccgtagataattgaattggcattctattcttgaattatatttgtcctta-------ttttccccatcatta |
31877662 |
T |
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| Q |
207 |
ctggattttggcagtgtcaattactcaatatcagt--------tacagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgt |
298 |
Q |
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| T |
31877661 |
atggattttggcagtgcaaattaatcagtatcagtctattggttacagccctacaacagaagacgatattcactgtcgcgaaactatcttcaacctatgt |
31877562 |
T |
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| Q |
299 |
acaacttgaacaatcacata-tctctagacttt |
330 |
Q |
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| T |
31877561 |
acaacttggacaatcacatattctctagacttt |
31877529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 31556020 - 31556173
Alignment:
| Q |
144 |
aattgaatcggctttctgttcttgaattatatttgtccttgctttattttttctccgtcattactggattttggcagtgtcaattactcaatatcagtta |
243 |
Q |
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|||||||| ||| |||| ||||||||||||||||||| ||||||||| | | |||||||||||||||||||||| ||||| ||| ||||||||| |
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| T |
31556020 |
aattgaattggcattctattcttgaattatatttgtc-----tttatttttcc--catcattactggattttggcagtgcaaattaatcagtatcagtta |
31556112 |
T |
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| Q |
244 |
cagccctccaacaaaagacgatattcactgtcgagaatctatcttcaacctatgtacaact |
304 |
Q |
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| T |
31556113 |
cagccctccaactgaagacaatattcactgtcgcggatctattatcagcctatgtacaact |
31556173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 31555903 - 31556000
Alignment:
| Q |
46 |
aacaagaataatatagaatttggttgtatcattgttcaagatacatatatatttttaggacacatttttcaacttatgtcaattgtatctccgtagataa |
145 |
Q |
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| T |
31555903 |
aacaagaataatatagaagtaggttggatcattgttcaagctacatatata-ttttagaacacatt-------ttatgtcaattgtatctttgtagataa |
31555994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 31852320 - 31852379
Alignment:
| Q |
203 |
attactggattttggcagtgtcaattactcaatatcagttacagccctccaacaaaagac |
262 |
Q |
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| T |
31852320 |
attactggatttttgcagtgtcaattactcaatatcagttattgccctccaacagaagac |
31852379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 267 - 332
Target Start/End: Original strand, 31559210 - 31559280
Alignment:
| Q |
267 |
ttcactgtcgagaatctatcttcaacctatg----tacaacttgaacaatcacata-tctctagactttgc |
332 |
Q |
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| T |
31559210 |
ttcactgtcgcggatctatcttcaacctatgtacatacaacttggacaatcacatattctctagactttgc |
31559280 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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