View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_high_11 (Length: 241)
Name: NF20142_high_11
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 46031873 - 46031639
Alignment:
| Q |
1 |
ccatcgttgaatgatgaggtatggcgtctgaaagggatacgtaaaaatggtccacttgacaagctgttggcatcagatggaatacacactgttaaggatt |
100 |
Q |
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| T |
46031873 |
ccatcgttgaatgatgaggtatggcgtctgaaagggatacgtaaaaatggtccacttgacaagctgttggcatcagatggaatacacactgttaaggatt |
46031774 |
T |
|
| Q |
101 |
ttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattatgtgtggtattatgattctttatttggt |
200 |
Q |
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| T |
46031773 |
ttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattatgtgtggtattatgattctttatttggt |
46031674 |
T |
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| Q |
201 |
tgtttgatacttttgacattaatgttgtatatgat |
235 |
Q |
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| T |
46031673 |
tgtttgatacttttgacattaatgttgtatatgat |
46031639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 46019237 - 46019065
Alignment:
| Q |
1 |
ccatcgttgaatgatgaggtatggcgtctgaaagggatacgtaaaaatggtccacttgacaagctgttggcatcagatggaatacacactgttaaggatt |
100 |
Q |
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||||| ||||||||| ||||||||||||||| ||| ||||||| | |||| |||||||||||| |||||| | ||||||||||||||| ||||||||| |
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| T |
46019237 |
ccatcattgaatgataaggtatggcgtctgagaggaatacgtagagatggaacacttgacaagcagttggccttggatggaatacacactattaaggatt |
46019138 |
T |
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| Q |
101 |
ttttgagattgtacataaccaatgaagcttcattaagagaggtaagaaaatatactattgtttgaaatattat |
173 |
Q |
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| T |
46019137 |
ttttgcagctgttgataactaatgaagattcattaagaaatgtaagaaaatatactgttgtttgaaatattat |
46019065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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