View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20142_high_14 (Length: 237)

Name: NF20142_high_14
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20142_high_14
NF20142_high_14
[»] chr4 (12 HSPs)
chr4 (1-220)||(17645253-17645472)
chr4 (1-177)||(17605215-17605391)
chr4 (3-173)||(17631802-17631972)
chr4 (38-219)||(20751519-20751700)
chr4 (2-165)||(16480810-16480973)
chr4 (37-128)||(17664182-17664273)
chr4 (37-126)||(17649787-17649876)
chr4 (1-103)||(17676438-17676540)
chr4 (3-168)||(17950111-17950276)
chr4 (3-168)||(17953963-17954128)
chr4 (4-137)||(18766466-18766599)
chr4 (2-79)||(29880364-29880441)
[»] chr8 (1 HSPs)
chr8 (37-93)||(32669827-32669883)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 17645472 - 17645253
Alignment:
Q  1 ctggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  17645472 ctggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattctgtgaattgtaa 17645373  T
Q  101 acaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaaccgaaattg 200  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17645372 acaagagaaggacgagtaataggttgcacatgatgtcctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaaccgaaattg 17645273  T
Q  201 gtatcctcacagtggacaat 220  Q
    ||||||||||||||||||||    
T  17645272 gtatcctcacagtggacaat 17645253  T

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Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 17605391 - 17605215
Alignment:
Q  1 ctggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaa 100  Q
    ||||||||||||||||| | | ||||||| |||||| ||||||| |||||||||||||| ||| |||||| |||||||||||||||||| ||| ||||||    
T  17605391 ctggttacctcttgaatcatcaaagttcattgttgggtcttgaacgtttctcatgaaagcagacactggaaactcaacaagattattttctgaattgtaa 17605292  T
Q  101 acaatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggtactgg 177  Q
    |||||||  |||  | ||||||||| ||||| ||||||||| || | ||||||||||||||||||||||||||||||    
T  17605291 acaataggtggaaaattaataggttccacatgatgtcctagaagtgtattgtatggagcttgtgaaggaggtactgg 17605215  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 173
Target Start/End: Complemental strand, 17631972 - 17631802
Alignment:
Q  3 ggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaac 102  Q
    ||||| ||||||||| | | ||||||| | |||| ||||||||||||||||||||||  || | |||||||||||  ||||||||| ||||||| |||||    
T  17631972 ggttaactcttgaatcatcaaagttcattattgggtcttgaaagtttctcatgaaagctgacaatggagactcaatgagattatttggtgagttataaac 17631873  T
Q  103 aatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaaggaggta 173  Q
    | ||| ||||| | ||| || |||||||| || || ||| || | ||||| ||||||||||||||||||||    
T  17631872 attaggaggactattaacagattgcacatgatttcttagaagtgtattgtttggagcttgtgaaggaggta 17631802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 38 - 219
Target Start/End: Original strand, 20751519 - 20751700
Alignment:
Q  38 tcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaacaatagaaggacgagtaataggttgcacataatgtc 137  Q
    |||||||||||||||||||||| ||||| || ||||||  |||||||||||||| | |||| ||| | || ||||| ||||| ||  ||||||| |||||    
T  20751519 tcttgaaagtttctcatgaaagcagaaattgaagactcgtcaagattattttgtaaattgttaactagaggaggaccagtaaaagactgcacatgatgtc 20751618  T
Q  138 ctagcagcgcattgtatggagcttgtgaaggaggtactggagccggaaccttaaccgaaattggtatcctcacagtggacaa 219  Q
    |||| |  |  || ||||||||   ||||||||||| |||| ||||||||| ||| |||||||||  ||||||| |||||||    
T  20751619 ctagaaatgtgttatatggagcagttgaaggaggtaatggatccggaacctgaactgaaattggtggcctcacaatggacaa 20751700  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 16480810 - 16480973
Alignment:
Q  2 tggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaa 101  Q
    |||||||||||||||| | | || |||| ||| || |||||| ||||||||||||||| ||| | |||| |||| |||||||||||||||   |||||||    
T  16480810 tggttacctcttgaataatcaaatttcattgtagggtcttgagagtttctcatgaaagcagacattggaaactcgacaagattattttgtatattgtaaa 16480909  T
Q  102 caatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtga 165  Q
    || ||| ||||| | |||||| |||||||| ||  ||||| |  | ||||||||||||||||||    
T  16480910 cagtaggaggacaattaatagattgcacatgattccctagaattgtattgtatggagcttgtga 16480973  T

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Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 128
Target Start/End: Original strand, 17664182 - 17664273
Alignment:
Q  37 atcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaacaatagaaggacgagtaataggttgca 128  Q
    ||||||||| ||||||||||||| ||||| ||||||||||| ||||||||||| ||| |||||||||| || | ||| || |||||||||||    
T  17664182 atcttgaaattttctcatgaaagcagaaattggagactcaaaaagattattttctgaattgtaaacaaaaggatgaccagaaataggttgca 17664273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 37 - 126
Target Start/End: Complemental strand, 17649876 - 17649787
Alignment:
Q  37 atcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaacaatagaaggacgagtaataggttg 126  Q
    ||||||||| ||||||||||||| ||||| |||||| || ||||||||||||| ||| |||||||||| || ||||| |||||| |||||    
T  17649876 atcttgaaattttctcatgaaagcagaaattggagattcgacaagattattttctgaattgtaaacaaaaggaggaccagtaattggttg 17649787  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 17676438 - 17676540
Alignment:
Q  1 ctggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaa 100  Q
    ||||||||||||||||||  |  ||||||   ||| ||||||||| | ||||||||||| ||||| ||||||||| ||||||||||||| ||| ||||||    
T  17676438 ctggttacctcttgaattgtcatagttcatcattgaatcttgaaattctctcatgaaagcagaaattggagactcgacaagattattttctgaattgtaa 17676537  T
Q  101 aca 103  Q
    |||    
T  17676538 aca 17676540  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 17950111 - 17950276
Alignment:
Q  3 ggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaac 102  Q
    ||||||||  ||||||||| |||||||   |||  |||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| |||| |||    
T  17950111 ggttaccttatgaattaccaaagttcatatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtgaattgttaac 17950210  T
Q  103 aatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaagg 168  Q
     | || ||||| ||||| |   ||||||| ||||||| | |  || || |||||||| ||||||||    
T  17950211 tagaggaggactagtaacatactgcacatgatgtcctggaaatgcgttatatggagcctgtgaagg 17950276  T

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Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 17953963 - 17954128
Alignment:
Q  3 ggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaac 102  Q
    ||||||||  ||||||||| |||||||   |||  |||||||||||||||||||||| ||||| |||||||||  |||||||||| ||||| |||| |||    
T  17953963 ggttaccttatgaattaccaaagttcatatttgactcttgaaagtttctcatgaaagcagaaattggagactcgtcaagattattctgtgaattgttaac 17954062  T
Q  103 aatagaaggacgagtaataggttgcacataatgtcctagcagcgcattgtatggagcttgtgaagg 168  Q
     | || ||||| ||||| |   ||||||| ||||||| | |  || || |||||||| ||||||||    
T  17954063 tagaggaggactagtaacatactgcacatgatgtcctggaaatgcgttatatggagcctgtgaagg 17954128  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 137
Target Start/End: Complemental strand, 18766599 - 18766466
Alignment:
Q  4 gttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtgagttgtaaaca 103  Q
    |||||||  ||||||||| |||||||   |||  ||||||||||||||||| |||| ||||| || |||||||   |||||||||| ||| |||| |||     
T  18766599 gttaccttctgaattaccaaagttcatatttgactcttgaaagtttctcataaaagcagaaattgaagactcatagagattattttatgaattgttaact 18766500  T
Q  104 atagaaggacgagtaataggttgcacataatgtc 137  Q
    | || ||||| ||||| ||  ||||||| |||||    
T  18766499 agaggaggaccagtaacagactgcacatgatgtc 18766466  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 79
Target Start/End: Original strand, 29880364 - 29880441
Alignment:
Q  2 tggttacctcttgaattacccaagttcaatgttggatcttgaaagtttctcatgaaagaagaaactggagactcaaca 79  Q
    |||||||||||||||||| | |||||||  ||||  | |||||| ||||||||||||| ||| ||| |||| ||||||    
T  29880364 tggttacctcttgaattatcaaagttcatcgttgagttttgaaaatttctcatgaaagcagacactagagattcaaca 29880441  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 93
Target Start/End: Complemental strand, 32669883 - 32669827
Alignment:
Q  37 atcttgaaagtttctcatgaaagaagaaactggagactcaacaagattattttgtga 93  Q
    ||||||||| | ||||||||||| ||||| |||||| ||||||||||| ||||||||    
T  32669883 atcttgaaaatctctcatgaaagcagaaattggagattcaacaagattgttttgtga 32669827  T

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