View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20142_high_7 (Length: 269)

Name: NF20142_high_7
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20142_high_7
NF20142_high_7
[»] chr8 (2 HSPs)
chr8 (16-251)||(14248214-14248449)
chr8 (19-95)||(13311780-13311856)
[»] chr3 (3 HSPs)
chr3 (62-251)||(30366686-30366876)
chr3 (31-191)||(50192056-50192216)
chr3 (31-167)||(30762026-30762163)
[»] chr2 (1 HSPs)
chr2 (16-90)||(29298837-29298911)
[»] chr7 (1 HSPs)
chr7 (64-161)||(18319883-18319980)
[»] scaffold0323 (1 HSPs)
scaffold0323 (31-173)||(10947-11090)
[»] chr5 (1 HSPs)
chr5 (16-131)||(1337815-1337930)
[»] chr4 (1 HSPs)
chr4 (60-154)||(41304734-41304828)


Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 14248449 - 14248214
Alignment:
Q  16 aatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagc 115  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248449 aatatcattttcaaaaatggtggtatagaggtggaagtagtagcggaggatattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagc 14248350  T
Q  116 cgtgtttgtattatgaatggcggtggaatccgagatggtatcttggagttttgcgcggctgagttttggttgctgttgcggttctggttggttcctgatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14248349 cgtgtttgtattatgaatggcggtggaatccgagatggtatcttggagttttgcgcggctgagttttggttgctgttgcggttctggttggttcctgatt 14248250  T
Q  216 gctggtgcagtgtagatagcaggtgcctggctgctg 251  Q
    ||||||| ||||||||||||||||||||||||||||    
T  14248249 gctggtgtagtgtagatagcaggtgcctggctgctg 14248214  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 13311780 - 13311856
Alignment:
Q  19 atcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagtggagctt 95  Q
    |||||||| || ||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||||||    
T  13311780 atcatttttaacaatggtggtatagaggtggaagatgtagttgaggaaattaaaatgttgtcgtggaagtggagctt 13311856  T

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Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 62 - 251
Target Start/End: Original strand, 30366686 - 30366876
Alignment:
Q  62 aggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttgg 161  Q
    ||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||| |||||||  ||| |    
T  30366686 aggaaatgaaaatgttgtcgtggaagtggagcttatctcggttgaagattcagccgtgtttgtattatgaaaggcggtggaatccaagatggtgccttcg 30366785  T
Q  162 agttttgcgcggctgagttttggttgctgttgcggttctggtt-ggttcctgattgctggtgcagtgtagatagcaggtgcctggctgctg 251  Q
     ||||||||| |||||||||||||| ||||||||||||||||| | || ||| |||||||||| ||| ||| |||||||| | ||||||||    
T  30366786 tgttttgcgcagctgagttttggttactgttgcggttctggttcgtttactgcttgctggtgcggtgaagacagcaggtgacaggctgctg 30366876  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 31 - 191
Target Start/End: Complemental strand, 50192216 - 50192056
Alignment:
Q  31 aatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatg 130  Q
    ||||| || |||||||||||||  ||   ||| |||||||||||| |||| ||||||||||| ||  || | ||||  | ||| | ||| ||||||||||    
T  50192216 aatggcggcatagaggtggaagatgttttggacgaaattaaaatgctgtcttggaagtggagtttggctagattgaggattcatctgtgcttgtattatg 50192117  T
Q  131 aatggcggtggaatccgagatggtatcttggagttttgcgcggctgagttttggttgctgt 191  Q
    ||||||| |||||||||| |||||  |||||  ||||||||| ||||||||  ||||||||    
T  50192116 aatggcgatggaatccgaaatggtgccttggtattttgcgcgcctgagtttctgttgctgt 50192056  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 167
Target Start/End: Complemental strand, 30762163 - 30762026
Alignment:
Q  31 aatggtggtatagaggtggaagtagtagcggaggaaattaaaatg-ttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattat 129  Q
    ||||| |||||||||||||||| ||| | | |||| ||||||| | || |||||||  ||||| |||||  || |||||| ||| ||||||||||  |||    
T  30762163 aatggcggtatagaggtggaagaagtggtgcaggacattaaaaaggttatcgtggatttggagtttatcgaggctgaaaattcaaccgtgtttgttctat 30762064  T
Q  130 gaatggcggtggaatccgagatggtatcttggagtttt 167  Q
    ||||| |||||||||| ||  ||||  |||||||||||    
T  30762063 gaatgacggtggaatctgaagtggtgccttggagtttt 30762026  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Original strand, 29298837 - 29298911
Alignment:
Q  16 aatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagtgg 90  Q
    ||||||||||| |||||||||||| |||||||||| | ||||| |||||| || ||||||||||| |||||||||    
T  29298837 aatatcattttcaaaaatggtggtgtagaggtggaggaagtagtggaggatatcaaaatgttgtcttggaagtgg 29298911  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 64 - 161
Target Start/End: Complemental strand, 18319980 - 18319883
Alignment:
Q  64 gaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggtatcttgg 161  Q
    |||||| |||||||||||||||||||||||||| |  ||||||| | |||||| |||||||  | ||||||| | ||||||||||| |||| ||||||    
T  18319980 gaaattcaaatgttgtcgtggaagtggagcttagcgaggttgaagattcagccatgtttgttctttgaatggagatggaatccgaggtggtgtcttgg 18319883  T

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Target: scaffold0323 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0323
Description:

Target: scaffold0323; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 173
Target Start/End: Original strand, 10947 - 11090
Alignment:
Q  31 aatggtggtatagaggtggaagtagtagcggaggaaattaaaatg-ttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattat 129  Q
    ||||| |||||||||||||||| | | | |||||| ||||||| | || |||||||  ||||| |||||  || |||||| ||| ||||||||||  |||    
T  10947 aatggcggtatagaggtggaagaattggtggaggacattaaaaaggttatcgtggatttggagtttatcgaggctgaaaattcaaccgtgtttgttctat 11046  T
Q  130 gaatggcggtggaatccgagatggtatcttggagttttgcgcgg 173  Q
    |||||||||||||||| ||  ||||  ||||||||||| |||||    
T  11047 gaatggcggtggaatctgaagtggtcccttggagttttacgcgg 11090  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 1337815 - 1337930
Alignment:
Q  16 aatatcattttaaaaaatggtggtatagaggtggaagtagtagcggaggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagc 115  Q
    |||||||| || || ||||  |||||||| ||| ||| ||| | ||| ||||| ||||||||||||||||||||||  ||||||||  |||||| |||      
T  1337815 aatatcatatttaataatgccggtatagaagtgcaagaagtggtggaagaaatcaaaatgttgtcgtggaagtggaatttatctcgactgaaaattcaag 1337914  T
Q  116 cgtgtttgtattatga 131  Q
     |||||||| ||||||    
T  1337915 tgtgtttgttttatga 1337930  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 41304734 - 41304828
Alignment:
Q  60 ggaggaaattaaaatgttgtcgtggaagtggagcttatctcggttgaaaactcagccgtgtttgtattatgaatggcggtggaatccgagatggt 154  Q
    |||||| || ||| ||||||||||||| |||||  |||| ||||| |||| | |  |||||||||  ||||| |||| |||||||||||||||||    
T  41304734 ggaggatataaaactgttgtcgtggaaatggagtctatcccggttaaaaattaaatcgtgtttgttctatgattggctgtggaatccgagatggt 41304828  T

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