View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20142_high_8 (Length: 262)
Name: NF20142_high_8
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 12615777 - 12616000
Alignment:
| Q |
18 |
ataggggggaccaaataaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattcatatcatat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12615777 |
ataggggggaccaaatgaaaactataacgatctaaagaaaatgaacaacaaaagaaattacatagccccacaattttccaaattattattcatatcatat |
12615876 |
T |
|
| Q |
118 |
ttgttcaagacatgttgtcaccctgatt---nnnnnnncaagcagtttataccgtcattgttcatgata--gtatagtaaaccaagcatgcaataaatgc |
212 |
Q |
| |
|
|| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
12615877 |
ttcttcaagacatgttgtcaccctgattaaaaaaaaaccaagcagtttataccgtcattgttcatgatagtgtatactaaaccaagcatgcaataaatgc |
12615976 |
T |
|
| Q |
213 |
aaaagatttggccaatgatatatt |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12615977 |
aaaagatttggccaatgatatatt |
12616000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University