View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_high_9 (Length: 247)
Name: NF20142_high_9
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 14051945 - 14051728
Alignment:
| Q |
16 |
caggtaccccatagcagcactagctttgagggtggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatctgcaagcaaggatttgtatcga |
115 |
Q |
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| T |
14051945 |
caggtaccccatagcagcactagctttgagggtggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatctgcaagcaaggatttgtatcga |
14051846 |
T |
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| Q |
116 |
gaatcgagaagtactttttcagccgatatactctgatgaactagagaatgcttccttcctttctttccatgcagataagaaatacctgaacaagacacaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14051845 |
gaatcgagaagtactttttcagccgatatactctgatgaactagagaatgcttccttcctttctttccatgcagataaaaaatacctgaacaagacacaa |
14051746 |
T |
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| Q |
216 |
tcacataatatgttactt |
233 |
Q |
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|||||||||||||||||| |
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| T |
14051745 |
tcacataatatgttactt |
14051728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 14361973 - 14361757
Alignment:
| Q |
16 |
caggtaccccatagcagcactagctttgagggtggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatctgcaagcaaggatttgtatcga |
115 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14361973 |
caggtaccccatagcagcactagctttgagg-tggagaaaacaacatcatctgcaaggagtttgtgcaatcctgaatctgcaagcaaggatttgtatcga |
14361875 |
T |
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| Q |
116 |
gaatcgagaagtactttttcagccgatatactctgatgaactagagaatgcttccttcctttctttccatgcagataagaaatacctgaacaagacacaa |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14361874 |
gaatcgagaagtactttttcagccgatatactctgatgaactaganaatgcttccttcctttctttccatgcagataaaaaatacctgaacaagacacaa |
14361775 |
T |
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| Q |
216 |
tcacataatatgttactt |
233 |
Q |
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|||||||||||||||||| |
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| T |
14361774 |
tcacataatatgttactt |
14361757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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