View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_10 (Length: 265)
Name: NF20142_low_10
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43288519 - 43288739
Alignment:
| Q |
1 |
aaagagaagcttatagattgtgttaaccggaaccagggagatagcgttcactgatgtcggtagaatattctaatatgtctatttcaattatggtatgaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288519 |
aaagagaagcttatagattgtgttaaccggaaccagggagatagcgttcactgatgtcggtagaatattctaatatgtctatttcaattatggtatgaaa |
43288618 |
T |
|
| Q |
101 |
gaatcagagcatggaaacctttgtaagttttaaacttttctccccttgaaatcatgcacaaggggtcaggtacacattcaaatctcatatctcaaatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43288619 |
gaatcagagcatggaaacctttgtaagttttaaacttttctccccttggaatcatccacaaggggtcaggtacacattcaaatctcatatctcaaatttt |
43288718 |
T |
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| Q |
201 |
gtgtgttgaaattgtgagagc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
43288719 |
gtgtgttgaaattgtgagagc |
43288739 |
T |
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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 24044197 - 24044122
Alignment:
| Q |
121 |
ttgtaagttttaaacttttctccccttgaaatcatgcacaaggggtcaggtacacattcaaatctcatatctcaaa |
196 |
Q |
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||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||| | |||||||||| |
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| T |
24044197 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaatttaatatctcaaa |
24044122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 10940696 - 10940621
Alignment:
| Q |
121 |
ttgtaagttttaaacttttctccccttgaaatcatgcacaaggggtcaggtacacattcaaatctcatatctcaaa |
196 |
Q |
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| T |
10940696 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaatttgatatctcaaa |
10940621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 10946565 - 10946490
Alignment:
| Q |
121 |
ttgtaagttttaaacttttctccccttgaaatcatgcacaaggggtcaggtacacattcaaatctcatatctcaaa |
196 |
Q |
| |
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||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||| | |||||||||| |
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| T |
10946565 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaatttgatatctcaaa |
10946490 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 121 - 196
Target Start/End: Complemental strand, 49390178 - 49390103
Alignment:
| Q |
121 |
ttgtaagttttaaacttttctccccttgaaatcatgcacaaggggtcaggtacacattcaaatctcatatctcaaa |
196 |
Q |
| |
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||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||| ||| | |||||||||| |
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| T |
49390178 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaaggggtcaggtacacattctaatttgatatctcaaa |
49390103 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 121 - 196
Target Start/End: Original strand, 13816614 - 13816689
Alignment:
| Q |
121 |
ttgtaagttttaaacttttctccccttgaaatcatgcacaaggggtcaggtacacattcaaatctcatatctcaaa |
196 |
Q |
| |
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||||||||||||||| |||||| |||||||||| ||||| ||||||||||||||||| ||| | |||||||||| |
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| T |
13816614 |
ttgtaagttttaaacacgtctccctttgaaatcatccacaatgggtcaggtacacattctaatttgatatctcaaa |
13816689 |
T |
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