View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_12 (Length: 250)
Name: NF20142_low_12
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 42309511 - 42309752
Alignment:
| Q |
1 |
tctcttcctctgtccaacctttagcattatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatcttaaacaga |
100 |
Q |
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| T |
42309511 |
tctcttcctctgtccaacctttagcattatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatcttaaacaga |
42309610 |
T |
|
| Q |
101 |
aacttcatttctttgattttggatcgcacgaaggaataataattgcaataggcaactcttacttaccacgttcaagaagagtatctttacagcggctttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42309611 |
aacttcatttctttgattttggatcgcacgaaggaataataattgcaataggcaattcttacttaccacgttcaagaagagtatctttacagcggctttt |
42309710 |
T |
|
| Q |
201 |
agcttcatcaagtaaatcaaccaatcaaacagtctctctgct |
242 |
Q |
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| T |
42309711 |
agcttcatcaagtaaatcaaccaatctaacagtctcgctgct |
42309752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 51569272 - 51569028
Alignment:
| Q |
1 |
tctcttcctctgtccaacctttagcattatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatctt----aaa |
96 |
Q |
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|||||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| ||||| |||| ||||| ||| |
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| T |
51569272 |
tctcttcctccgtccaatctttagcattatctagatgaacataggatttagaaggttaactgtctaatgcataatatcagttccatagatcttcaacaaa |
51569173 |
T |
|
| Q |
97 |
cagaaacttcatttctttgattttggatcgcacgaagg----aataataattgcaataggcaactcttac-ttaccacgttcaagaagagtatctttaca |
191 |
Q |
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| T |
51569172 |
cagaaacttcatttctttgattctggtttgcatgaaggaagaaataaaaattgcaataagcaactggtactttaccacgttcaagaagagcaactttaca |
51569073 |
T |
|
| Q |
192 |
gcggcttttagcttcatcaagtaaatcaaccaatcaaacagtctc |
236 |
Q |
| |
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||| |||||||||||||||||||||||||| |||| ||||||||| |
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| T |
51569072 |
gcgccttttagcttcatcaagtaaatcaactaatcgaacagtctc |
51569028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 47973650 - 47973900
Alignment:
| Q |
1 |
tctcttcctctgtccaacctttagcattatctagatgaacaaaggaattagaaggttaactgtctgatgcataataccagtttcatatatctt----aaa |
96 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||| ||| |||||||||||||||||| ||||| |||| ||||| |||| ||||| ||| |
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| T |
47973650 |
tctcttcctccgtccaatctttagcattatctagatgaacatgggatttagaaggttaactgtctaatgcacaatatcagttccatagatcttccacaaa |
47973749 |
T |
|
| Q |
97 |
cagaaacttcatttctttgattttggatcgcacgaaggaa----taataattgcaataggcaactcttactt-accacgttcaagaagagtatctttaca |
191 |
Q |
| |
|
|||||||||||||| ||||||| ||| || || ||||||| ||| ||||||||||||||| | ||||| ||||||||||||||||| | ||||||| |
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| T |
47973750 |
cagaaacttcatttatttgattctggctcacatgaaggaagaaataaaaattgcaataggcaaatggtactttaccacgttcaagaagagcaactttaca |
47973849 |
T |
|
| Q |
192 |
gcggcttttagcttcatcaagtaaatcaaccaatcaaacagtctctctgct |
242 |
Q |
| |
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||| ||||||||||||||||||||||||||||||| ||||||||| ||||| |
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|
| T |
47973850 |
gcgccttttagcttcatcaagtaaatcaaccaatcgaacagtctcgctgct |
47973900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 34032016 - 34031955
Alignment:
| Q |
163 |
ttaccacgttcaagaagagtatctttacagcggcttttagcttcatcaagtaaatcaaccaa |
224 |
Q |
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||||||||||||||||| | | ||||||||| ||||||||||||||||| ||||||||||| |
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| T |
34032016 |
ttaccacgttcaagaagggcagttttacagcgccttttagcttcatcaagcaaatcaaccaa |
34031955 |
T |
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