View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_17 (Length: 237)
Name: NF20142_low_17
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 10992726 - 10992516
Alignment:
| Q |
12 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
111 |
Q |
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| T |
10992726 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
10992627 |
T |
|
| Q |
112 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992626 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
10992527 |
T |
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| Q |
212 |
tcttaatttct |
222 |
Q |
| |
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||||||||||| |
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| T |
10992526 |
tcttaatttct |
10992516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 10930522 - 10930312
Alignment:
| Q |
12 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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| T |
10930522 |
agcacagaaaccgaccaatctaacaatattaacatgatggattctacccattgtaccaacttcattgaggaaatcttgcccgtttccttgtgaaacattt |
10930423 |
T |
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| Q |
112 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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| T |
10930422 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcgccaaaattatttgtgattc |
10930323 |
T |
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| Q |
212 |
tcttaatttct |
222 |
Q |
| |
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| ||||||||| |
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| T |
10930322 |
ttttaatttct |
10930312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 11026182 - 11025972
Alignment:
| Q |
12 |
agcacagaaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaattt |
111 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||| |||||| ||||||||||||||||| ||||| ||||| || ||||| ||||||| |||| |
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| T |
11026182 |
agcacagaaaccgaccaatcggacaatattaacatggtggattctactcattgtaccaacttcatttaggaagtcttggccatttccctgagaaacattt |
11026083 |
T |
|
| Q |
112 |
agtatcttcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattc |
211 |
Q |
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|||||||||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || ||||||||||||| |
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| T |
11026082 |
agtatcttcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattc |
11025983 |
T |
|
| Q |
212 |
tcttaatttct |
222 |
Q |
| |
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|||| |||||| |
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| T |
11025982 |
tcttgatttct |
11025972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 11040878 - 11040675
Alignment:
| Q |
19 |
aaaccgaccaatctaacaatattaacatgatgggttctaccaattgtaccaacttcattgaggaaatcttgcccgtttccttgagaaaaatttagtatct |
118 |
Q |
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||||||| ||| | ||||||||||||||| || ||||||| |||||||| |||||||| ||||| ||||| || ||||| ||||||| ||||||||||| |
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| T |
11040878 |
aaaccgatcaaacgaacaatattaacatggtgtattctacccattgtacccacttcatttaggaagtcttggccatttccctgagaaacatttagtatct |
11040779 |
T |
|
| Q |
119 |
tcacagcaacaatgatttcttttgaaatgcttcctctatatacagttccataggcaccttgtcctaacttgtcactaaagttatttgtgattctcttaat |
218 |
Q |
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||||||||||| | | ||||||||||||||||||| |||| |||||||||||||| |||||||||||| | || | || |||||||||||||||||||| |
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| T |
11040778 |
tcacagcaacactaaattcttttgaaatgcttcctttataaacagttccataggctccttgtcctaacatatccccgaaattatttgtgattctcttaat |
11040679 |
T |
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| Q |
219 |
ttct |
222 |
Q |
| |
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|||| |
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|
| T |
11040678 |
ttct |
11040675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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