View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_2 (Length: 495)
Name: NF20142_low_2
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 92 - 345
Target Start/End: Complemental strand, 24932253 - 24932000
Alignment:
| Q |
92 |
aaaaacagataatgatgaccggatggacaagctagccgaaagtcaagaaaattatatcttggatatgtcgagggcacgggaaccctcccacggttagagc |
191 |
Q |
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| T |
24932253 |
aaaaacagataatgatgaccggatggacaagctagccgaaagtcaagaaaattatatcttggatatgtcgagggcacgggaaccctcccacggttagagc |
24932154 |
T |
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| Q |
192 |
tctaaagatattaatttctgtgtagcacccacacataattgttttgatgtgttccatcttaggaacatagcaggactatatgatattactactgtttgct |
291 |
Q |
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| T |
24932153 |
tctaaagatattaatttctgtgtagcacccatacataattgttttgatgtgttccatcttaggaacatagcaggactatatgatattactactgtttgct |
24932054 |
T |
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| Q |
292 |
gcaaaaatttccaacgattctagagctagtggtcttgcctgtctctgtaccaat |
345 |
Q |
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| T |
24932053 |
gcaaaaatttccaacaattctagagctagtggtcttgcctgtctctgtaacaat |
24932000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 24932442 - 24932365
Alignment:
| Q |
11 |
agcagagaagaaaatgttgacaaaggagcaaatcaggatcaaagtgtacaagacataaggacaactttgctgccagta |
88 |
Q |
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| T |
24932442 |
agcagagaagaaaatgttgacaaagtagcaaatcaggatcaaagtgtacaagacataaggacaactttgctgccagta |
24932365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 439 - 476
Target Start/End: Complemental strand, 24931650 - 24931613
Alignment:
| Q |
439 |
agaatgagagatagaaagctgaaagaaaaggagagacg |
476 |
Q |
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| T |
24931650 |
agaatgagagatagaaagctgaaagaaaaggagagacg |
24931613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 384 - 431
Target Start/End: Complemental strand, 24931900 - 24931853
Alignment:
| Q |
384 |
gtaataagatccttatccaaattggtttgtgtttgaagatttcaactt |
431 |
Q |
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| T |
24931900 |
gtaataagatccttatacaaattggtttgtctttggagatttcaactt |
24931853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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