View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20142_low_23 (Length: 216)

Name: NF20142_low_23
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20142_low_23
NF20142_low_23
[»] chr6 (12 HSPs)
chr6 (23-216)||(6505503-6505696)
chr6 (47-216)||(6526419-6526588)
chr6 (37-212)||(6516070-6516245)
chr6 (23-125)||(6465356-6465458)
chr6 (46-122)||(13035798-13035874)
chr6 (46-123)||(6473098-6473175)
chr6 (23-123)||(6528216-6528316)
chr6 (56-122)||(6520629-6520695)
chr6 (49-213)||(6496722-6496886)
chr6 (23-213)||(6461786-6461976)
chr6 (47-111)||(6523440-6523504)
chr6 (28-122)||(6457401-6457495)
[»] chr7 (1 HSPs)
chr7 (45-215)||(9665262-9665438)
[»] chr4 (1 HSPs)
chr4 (45-215)||(13536286-13536462)
[»] chr1 (2 HSPs)
chr1 (60-111)||(35231500-35231551)
chr1 (48-111)||(35243140-35243203)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 23 - 216
Target Start/End: Original strand, 6505503 - 6505696
Alignment:
Q  23 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505503 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 6505602  T
Q  123 aaaacttctaaccttttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaa 216  Q
    |||  |||| || |||||||| || |||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  6505603 aaagtttcttactttttcaatagcatcaaagaagaaaacctcttcagctatcaatgcaagcctagctgctcttgcaattaattttccataaaaa 6505696  T

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Target: chr6; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 47 - 216
Target Start/End: Original strand, 6526419 - 6526588
Alignment:
Q  47 ctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaaccttttcaatggc 146  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||| |||  |||  |    
T  6526419 ctccccattttttatcataaagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaatactttctaacttttggaatcac 6526518  T
Q  147 ttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaaa 216  Q
     |||| |||  ||||||||||||||| ||||||||| || || |||||||||||||||||||||||||||    
T  6526519 atcaaggaaacaaacctcttccgctatcaatgcaagtcttgcagctcttgcaatcaattttccataaaaa 6526588  T

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Target: chr6; HSP #3
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 37 - 212
Target Start/End: Complemental strand, 6516245 - 6516070
Alignment:
Q  37 gtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttctaacct 136  Q
    ||||||| ||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| ||||| || |    
T  6516245 gtaataattcctccccattttttgtcatacagaaatccatttccgttaaaagttccatcaagccatggttcaattgtttccttcaaaaagcttctgactt 6516146  T
Q  137 tttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccata 212  Q
    ||| ||| || |||| ||| ||||  ||||| |||| |||||| | ||| ||||||||||||||||||| ||||||    
T  6516145 tttgaatagcgtcaacgaaaaaaaattcttcagctatcaatgctaaccttgctgctcttgcaatcaattgtccata 6516070  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 23 - 125
Target Start/End: Original strand, 6465356 - 6465458
Alignment:
Q  23 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    ||||||||||||  |||| || |||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6465356 tagacccttgtttggtaacaattcctccccattttccatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatagtttccttcaa 6465455  T
Q  123 aaa 125  Q
    |||    
T  6465456 aaa 6465458  T

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Target: chr6; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 46 - 122
Target Start/End: Complemental strand, 13035874 - 13035798
Alignment:
Q  46 cctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13035874 cctccccattttttatcatagagaaatccatttccattaaaagttccatcaagccaaggctcaatggattccttcaa 13035798  T

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Target: chr6; HSP #6
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 6473175 - 6473098
Alignment:
Q  46 cctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaa 123  Q
    |||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||  ||| ||||||||||    
T  6473175 cctccccattttttatcatagagaaatccatttccattaaatgttccatcgagccaaggctcggtggattccttcaaa 6473098  T

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Target: chr6; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 6528216 - 6528316
Alignment:
Q  23 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    |||| |||||||  |||||||  |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||||||  | ||||||||    
T  6528216 tagagccttgttttgtaataatccctccccattttttatcatagagaaatccattacctttgaaagttccatcaagccaaggctcaatcatctccttcaa 6528315  T
Q  123 a 123  Q
    |    
T  6528316 a 6528316  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 6520695 - 6520629
Alignment:
Q  56 ttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    |||||||||||||||| |||||| || |||||||||||||||||||||||||||| |||||||||||    
T  6520695 ttttatcatatagaaaaccattttcactaaaagttccatcaagccaaggctcaatagtttccttcaa 6520629  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 6496722 - 6496886
Alignment:
Q  49 ccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-taaccttttcaatggct 147  Q
    |||||||| | ||| | |||||||||||| ||||| ||||||||||| | |||||||||||||||||| ||| ||||||||| ||||||||  |||  |     
T  6496722 ccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggtttctttc-aaaaacttcttaacctttggaatcaca 6496820  T
Q  148 tcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataa 213  Q
    || ||| |  |||||||||| |||| |||||||| ||| || || ||| |||||||||| ||||||    
T  6496821 tctaagtatgaaacctcttcggctatcaatgcaaacctcgccgcccttccaatcaatttaccataa 6496886  T

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Target: chr6; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 23 - 213
Target Start/End: Complemental strand, 6461976 - 6461786
Alignment:
Q  23 tagacccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    ||||||||||||  |||| ||  || |||||||| | ||| | |||||||||||| ||||| ||||||||||| | ||||||||||||||||| |||  |    
T  6461976 tagacccttgttcggtaacaatgccaccccatttatcatcttgtagaaatccattcccatttaaagttccatctaaccaaggctcaatggttt-ctttta 6461878  T
Q  123 aaaacttc-taaccttttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataa 213  Q
    |||||||| ||||||||  |||  | || ||| |  |||||||||| |||| |||||||| ||| || || ||| |||||||||| ||||||    
T  6461877 aaaacttcttaacctttggaatcacatctaagtaagaaacctcttcagctatcaatgcaaacctcgccgcccttccaatcaatttaccataa 6461786  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 111
Target Start/End: Original strand, 6523440 - 6523504
Alignment:
Q  47 ctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 111  Q
    |||||||||| | |||||||||||||||||||   || |||||||||||||||||||||||||||    
T  6523440 ctccccatttctgatcatatagaaatccattttatttgaaagttccatcaagccaaggctcaatg 6523504  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 122
Target Start/End: Original strand, 6457401 - 6457495
Alignment:
Q  28 ccttgttgagtaataagtcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaa 122  Q
    |||||||  ||||| | |||||||||||||  |||||| ||||| |||||| | |||||||||||||  | ||| ||||| || |||||||||||    
T  6457401 ccttgtttggtaatgattcctccccattttccatcataaagaaaaccattttcgttaaaagttccattcaaccatggctcgatcgtttccttcaa 6457495  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 9665438 - 9665262
Alignment:
Q  45 tcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-------taacctt 137  Q
    |||||||||||| | |||||| |||||||||||| | || ||||||||||||| ||| || ||||| ||||| ||| |||||||||       |||| ||    
T  9665438 tcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttc-aaaaacttcttaatcttaacatt 9665340  T
Q  138 ttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaa 215  Q
    |  ||     |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  9665339 tggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaa 9665262  T

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Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 45 - 215
Target Start/End: Complemental strand, 13536462 - 13536286
Alignment:
Q  45 tcctccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatggtttccttcaaaaaacttc-------taacctt 137  Q
    |||||||||||| | |||||| |||||||||||| | || ||||||||||||| ||| || ||||| ||||| ||| |||||||||       |||| ||    
T  13536462 tcctccccatttctgatcatacagaaatccattttctttgaaagttccatcaaaccacggttcaatagtttctttc-aaaaacttcttaatcttaacatt 13536364  T
Q  138 ttcaatggcttcaaagaagaaaacctcttccgctaccaatgcaagcctagctgctcttgcaatcaattttccataaaa 215  Q
    |  ||     |||||||| ||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  13536363 tggaaccatatcaaagaaaaaaacgtcttcagctatcaatgcaagcctagctgctcttgcaatcaattttccataaaa 13536286  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 60 - 111
Target Start/End: Complemental strand, 35231551 - 35231500
Alignment:
Q  60 atcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 111  Q
    ||||||||||||||||||| | || | || ||||||||||||||||||||||    
T  35231551 atcatatagaaatccattttctttgatagctccatcaagccaaggctcaatg 35231500  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 111
Target Start/End: Complemental strand, 35243203 - 35243140
Alignment:
Q  48 tccccattttttatcatatagaaatccatttccattaaaagttccatcaagccaaggctcaatg 111  Q
    |||||||| || |||||||| |||| ||||| | || |||||||||||||||||| ||||||||    
T  35243203 tccccattcttgatcatatacaaattcattttctttgaaagttccatcaagccaaagctcaatg 35243140  T

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