View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_3 (Length: 396)
Name: NF20142_low_3
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_3 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 33092466 - 33092861
Alignment:
| Q |
1 |
acatgccctgaaaaagaatgacaacgagttcatcccaaaaaagaaaggcagaagactttgatgatttactaccagaagattgttgggaatttgtattatc |
100 |
Q |
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|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33092466 |
acatgctctaaaaaagaatgacaacgagttcatcccaaaaaagaaaggcagaagactttgatgatttactaccagaagattgttgggaatttgtattatc |
33092565 |
T |
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| Q |
101 |
aaaactcctcaagatcgataacatcgaccaccgtaaccgttatataaggcagactctatcctttgtctccaaaaggttctatccaccagcggttgtttag |
200 |
Q |
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| T |
33092566 |
aaaactcctcaagatcgataacatcgaccaccgtaaccgttatataaggcagactgtatcctttgtctccaaaaggttctatccaccagcggttgttaag |
33092665 |
T |
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| Q |
201 |
tatattctctaacaatcttgaatccatcagtatgcctcactcgcattttccacagattcccatacctaacctccctcgacttctctcgcttccgcggcga |
300 |
Q |
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| T |
33092666 |
tatattctctcacaatcttgaatccatcagtatgcctcactcgcattttccacagattcccatacctaacctccctcgacttctctcgcttccgcggcga |
33092765 |
T |
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| Q |
301 |
cgacctcaactcgcttctctgtcgtgactcctgttcttgttccctctcctacctgacttccctcaacctctccaaccaccccacgttccctgcttt |
396 |
Q |
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| T |
33092766 |
cgacctcaactcgcttctctgtcgtgactcctgttcttgttccctctcctacctgacttccctcaacctctccaaccaccccacgttccctgcttt |
33092861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 392
Target Start/End: Original strand, 33713758 - 33713794
Alignment:
| Q |
356 |
acttccctcaacctctccaaccaccccacgttccctg |
392 |
Q |
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| T |
33713758 |
acttccctcaacctctccaaccaccccaccttccctg |
33713794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 356 - 390
Target Start/End: Original strand, 33707924 - 33707958
Alignment:
| Q |
356 |
acttccctcaacctctccaaccaccccacgttccc |
390 |
Q |
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||||||||||||||||||||||||||||| ||||| |
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| T |
33707924 |
acttccctcaacctctccaaccaccccaccttccc |
33707958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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