View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_4 (Length: 359)
Name: NF20142_low_4
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 23671850 - 23672184
Alignment:
| Q |
11 |
caaaggtaactagcccatgaaatgattgcccttgtaagggtgtgagtagctatattcgtttgtctcctatttcctaataaatttaaccttagtttaaatg |
110 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
23671850 |
caaaggtaactagcccatgaaatggctgcccttgtaagggtgtgagtagccatatttatttgtctcctatttcctaataaatttaacctcagtttaaatg |
23671949 |
T |
|
| Q |
111 |
taaagatatacaagaaacaatgttagaaacaactaaattaaactcggaaaagccatgatgatatgaggacatatcattcactagaattttagagtcaccg |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23671950 |
taaagatatacaagaaacaatgttagaaacaactaaattaaactcggaaaagccatgatgatatgaggacatatcattcactagaattttagagtcacca |
23672049 |
T |
|
| Q |
211 |
aaaaacaacaccatcaaaacctcatagctgccaatcgtgtcgcctgaatcgattgtagagttttgcatattgtcaagctgcctccgcaacaataaagtga |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23672050 |
aaaaacaacaccatcaaaacctcatagctgccaatcgtgtcgcctgaatcgattgtagagttttgcatattgtcaagctgcctccgcaacaataaagtga |
23672149 |
T |
|
| Q |
311 |
ccatgatgatccctgacgcaacgtgcagttgaagt |
345 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
23672150 |
ccatgatgatccctgacgcaacgtgcagttgaagt |
23672184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 345
Target Start/End: Original strand, 24044126 - 24044460
Alignment:
| Q |
11 |
caaaggtaactagcccatgaaatgattgcccttgtaagggtgtgagtagctatattcgtttgtctcctatttcctaataaatttaaccttagtttaaatg |
110 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||| |
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| T |
24044126 |
caaaggtaactagcccatgaaatggctgcccttgtaagggtgtgagtagccatatttatttgtctcctatttcctaataaatttaacctcagtttaaatg |
24044225 |
T |
|
| Q |
111 |
taaagatatacaagaaacaatgttagaaacaactaaattaaactcggaaaagccatgatgatatgaggacatatcattcactagaattttagagtcaccg |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044226 |
taaagatatacaagaaacaatgttagaaacaactaaattaaactcggaaaagccatgatgatatgaggacatatcattcactagaattttagagtcacca |
24044325 |
T |
|
| Q |
211 |
aaaaacaacaccatcaaaacctcatagctgccaatcgtgtcgcctgaatcgattgtagagttttgcatattgtcaagctgcctccgcaacaataaagtga |
310 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24044326 |
aaaaacaacaccatcaaaacctcatagctgccaatcgtgtcgcctgaatcgattgtagagttttgcatattgtcaagctgcctccgcaacaataaagtga |
24044425 |
T |
|
| Q |
311 |
ccatgatgatccctgacgcaacgtgcagttgaagt |
345 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
24044426 |
ccatgatgatccctgacgcaacgtgcagttgaagt |
24044460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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