View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_5 (Length: 353)
Name: NF20142_low_5
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 44845129 - 44845463
Alignment:
| Q |
18 |
tttgaatcgggttaaaaatgtccgatctaacaatatagtcattgtcatttgagttaggtcttacggactattattatctaacttacttgcatgtcacgnn |
117 |
Q |
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| T |
44845129 |
tttgaatcgggttaaaaatgtccgatctaacaatatagtcattgtcatttgagttaggtcttacggactattattatctaacttacttgcatgtcacgtt |
44845228 |
T |
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| Q |
118 |
nnnnnggttatacagaaacggaacgtgaagaccaacatcttgttgattctgttcccattgattctttctgtcttgcttatttcccttcaaagtttggtca |
217 |
Q |
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| T |
44845229 |
tttttggttatacagaaacggaacgtgaagaccaacatcttgttgattctgttcccattgattctttctgtcttgcttatttcccttcaaagtttggtca |
44845328 |
T |
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| Q |
218 |
atcatcaactgactcaacccgaatccaaatgcggttgtgtctgtcgcgacaacagtacaacatgtaacgattcagacaagttttgtggggttcagtattc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44845329 |
atcatcaactgactcaacccgaatccaaatgcggttgtgtctgtcgcgacaacagtacaacatgtaacgattcagacaagctttgtggggttcagtattc |
44845428 |
T |
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| Q |
318 |
ggatcagactcaaatggcagcctatgctactcctc |
352 |
Q |
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| T |
44845429 |
ggatcagactcaaatggcagcctgtgctattcctc |
44845463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 44858354 - 44858410
Alignment:
| Q |
274 |
acaacatgtaacgattcagacaagttttgtggggttcagtattcggatcagactcaa |
330 |
Q |
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| T |
44858354 |
acaacatgtaacgattcggagaaggtttgtggggtccagtattctaatcagaatcaa |
44858410 |
T |
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