View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20142_low_6 (Length: 309)
Name: NF20142_low_6
Description: NF20142
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20142_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 3456898 - 3456617
Alignment:
| Q |
16 |
atctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaacaaaggaag |
115 |
Q |
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| T |
3456898 |
atctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaacaaaggaag |
3456799 |
T |
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| Q |
116 |
gaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagttatggcggagacaaacgtccggtttcaatattggacg |
215 |
Q |
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| T |
3456798 |
gaagttgagcaaagaaaattggagatacttaaagagaataatcgattcgaggaagagattagttatggcggagacaaacgtccggtttcaatattggacg |
3456699 |
T |
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| Q |
216 |
atgcttactatacttggcaagatctaccggcggcgataaggaaaagtaatgttgttgttcaaaacaagagaattgaaattga |
297 |
Q |
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| T |
3456698 |
atgcttactatacttggcaagatctaccggcggcgataaggaaaagtgatattgttgttcagaacaagagaattgaaattga |
3456617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 39 - 170
Target Start/End: Complemental strand, 3481229 - 3481098
Alignment:
| Q |
39 |
aacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaacaaaggaaggaagttgagcaaagaaaattgga |
138 |
Q |
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| T |
3481229 |
aacattgggagtataagcaggcaaatgcagtttgccttcttcgagaagagctcgacaaccttagcaaacaaaaggaggaagttgagcttaaaaagtgtga |
3481130 |
T |
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| Q |
139 |
gatacttaaagagaataatcgattcgaggaag |
170 |
Q |
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| T |
3481129 |
gatacttgaagacaataatagattcgaggaag |
3481098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 299
Target Start/End: Original strand, 48694156 - 48694198
Alignment:
| Q |
257 |
aaaagtaatgttgttgttcaaaacaagagaattgaaattgatg |
299 |
Q |
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| T |
48694156 |
aaaagtaatgttgttgtacaaaataagagagttgaaattgatg |
48694198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 48693925 - 48694050
Alignment:
| Q |
17 |
tctcaattggcttatttaatgcaacattgggagtataagcaagcgaacgcggttcggcttcttcgagaagagcttgacaatcttagcaaacaaaggaagg |
116 |
Q |
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|||||||| || ||| | ||| ||||||||||||||||||| |||| || || || ||||| ||||||| || ||||| || | ||||||||| ||| |
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| T |
48693925 |
tctcaattagcctatcttatgaaacattgggagtataagcaggcgagcgtggcgcgtcttctaagagaagaactcgacaacctaaacaaacaaagacagg |
48694024 |
T |
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| Q |
117 |
aagttgagcaaagaaaattggagata |
142 |
Q |
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| T |
48694025 |
atgttgagctaaggaagttggagata |
48694050 |
T |
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