View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20143_high_11 (Length: 222)
Name: NF20143_high_11
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_high_11 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: scaffold0287 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 206
Target Start/End: Original strand, 14372 - 14558
Alignment:
| Q |
20 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctga |
119 |
Q |
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| T |
14372 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctga |
14471 |
T |
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| Q |
120 |
ggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaag |
206 |
Q |
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| T |
14472 |
ggtcaagcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaag |
14558 |
T |
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Target: chr7 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 206
Target Start/End: Complemental strand, 3631713 - 3631527
Alignment:
| Q |
20 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctga |
119 |
Q |
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| T |
3631713 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccaaaaaaatttctagcttttctcatgtgagaaaatctga |
3631614 |
T |
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| Q |
120 |
ggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaag |
206 |
Q |
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| T |
3631613 |
ggtcaagcaaatgattgaaaaaatatctaaccatgttcattcctctgaaatttcaaaccttagtgagatcctaatgtctgtcttaag |
3631527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 207
Target Start/End: Complemental strand, 3621316 - 3621129
Alignment:
| Q |
20 |
caccatacaatgatcattggagagagataagaaaaatttgtattgtccatttctttagctccnnnnnnntttctagcttttctcatgtgagaaaatctga |
119 |
Q |
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| T |
3621316 |
caccatacaatgattgttggagagagataagaaaaatttgtgttgtccatttctttagctccaaaaaaatttctagctttgctcatgtgagaaaatctga |
3621217 |
T |
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| Q |
120 |
ggtcaaacaaatgattgaaaaaatatctagccatgttcattcctttgaaatatcaaaccttagtgagatcctaatgtctgtcttaagt |
207 |
Q |
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| T |
3621216 |
ggtcaagctaatgattgaaaagatatctaaccatgtttgttcttccaaaatttcaaaccttagtgaggtcttaatgtctgtctcaagt |
3621129 |
T |
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