View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20143_high_12 (Length: 222)
Name: NF20143_high_12
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_high_12 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7709009 - 7709232
Alignment:
| Q |
1 |
gtcaccataaacatcacacttgctttgctttaaacccaaaatgagcacctaagaaagaaaaaagatattaaagatatgataatatatgaggatttggtta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7709009 |
gtcaccataaacatcacacttgctttgctttaaacccaaaatgagcacctaagaaagaaaaaagatattaaagatatgataatatatgaggatttggtta |
7709108 |
T |
|
| Q |
101 |
accactatgtaacactccttcattccttttttcccaaaat--atnnnnnnnnnnnnnnnatcttagtattatttaaggtctcaattctaaaagttccaaa |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
7709109 |
accactatgtaacactccttcattccttttttcccaaaatacacacacacacacacacaatcttagtattatttaaggcctcaattctaaaagttccaaa |
7709208 |
T |
|
| Q |
199 |
caaagggaagaaaatggggattat |
222 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7709209 |
caaagggaagaaaatggggattat |
7709232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 7711192 - 7711246
Alignment:
| Q |
18 |
acttgctttgctttaaacccaaaatgagcacctaagaaagaaaaaagatattaaa |
72 |
Q |
| |
|
|||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
7711192 |
acttgctttgttttaagcccaagatgagcacctaagaaagaaaaaagagattaaa |
7711246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University