View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20143_high_7 (Length: 286)
Name: NF20143_high_7
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20143_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 26357853 - 26357565
Alignment:
| Q |
1 |
gaaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgtt----------gtacaaccaacttttgatt |
90 |
Q |
| |
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||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
26357853 |
gaaattgtcttctcagtccatccaacacagtgatttggatattactagcttacatgtttgatatcagtgtttatcagtgttgtacaaccaacttttgatt |
26357754 |
T |
|
| Q |
91 |
tggtatgttagtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttact |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26357753 |
tggtatgttagtataacaattggatgctacccttttgatttggagtgttagtaatagcttgttgaatctttaggtattgcatcagttcttagttcttact |
26357654 |
T |
|
| Q |
191 |
cttggttatgtataattgttgctcaatttttgttccctgctcaacttaatcgtactatatcactcgctatgcataactgttgctctctg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26357653 |
cttggttatgtataattgttgctcaatttctgttccctgctcaacttaattgtactatatcactcgctatgcataactgttgctctctg |
26357565 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 233
Target Start/End: Complemental strand, 51759670 - 51759446
Alignment:
| Q |
2 |
aaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttag |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |
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| T |
51759670 |
aaattgtcttctcaatccattcaacatagttatttagatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttag |
51759571 |
T |
|
| Q |
102 |
tataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgt |
201 |
Q |
| |
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||||||| ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| || |||||| ||||||||||||||||||||| |
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| T |
51759570 |
tataacagttggatgctgcccttttgatttagagtgttagtaatagcttgttgaatctttagatactgcatc-------agttcttactcttggttatgt |
51759478 |
T |
|
| Q |
202 |
ataattgttgctcaatttttgttccctgctca |
233 |
Q |
| |
|
|||||||||||| ||||| ||||||| ||||| |
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|
| T |
51759477 |
ataattgttgcttaatttatgttcccagctca |
51759446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 129; Significance: 8e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 6685070 - 6684843
Alignment:
| Q |
2 |
aaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttag |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| || |||| |
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|
| T |
6685070 |
aaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatattag |
6684971 |
T |
|
| Q |
102 |
tataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgt |
201 |
Q |
| |
|
||||||| ||||||||| |||||||||||| ||||||| | ||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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|
| T |
6684970 |
tataacagttggatgctgcccttttgatttagagtgttaggtatagcttgttgaatctttaggtactgcatc-------agttcttactcttggttatgt |
6684878 |
T |
|
| Q |
202 |
ataattgttgctcaatttttgttccctgctcaact |
236 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||| |
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|
| T |
6684877 |
ataattgttgcataatttatgttcccagctcaact |
6684843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 30822045 - 30821828
Alignment:
| Q |
2 |
aaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttag |
101 |
Q |
| |
|
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |
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|
| T |
30822045 |
aaattgtcttctcaatccattcaacatagttatttggatattactagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgttag |
30821946 |
T |
|
| Q |
102 |
tataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgt |
201 |
Q |
| |
|
||||||| ||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||| || ||| ||||||||||||||||||| | |
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|
| T |
30821945 |
tataacagttggatgctgcccttttgattaagagtgttagtaatagcttgttgaatatttaggtactgaatc-------agttcttactcttggttattt |
30821853 |
T |
|
| Q |
202 |
ataattgttgctcaatttttgttcc |
226 |
Q |
| |
|
|||||||||||| ||||| |||||| |
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|
| T |
30821852 |
ataattgttgcttaatttctgttcc |
30821828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 30812783 - 30812556
Alignment:
| Q |
2 |
aaattgtcttctcaatccatccaacaccgtgatttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttag |
101 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||||||||||||||||||||||||| |||||| ||| |||||||||||| |||||||||| ||||||| |
|
|
| T |
30812783 |
aaattgtcttctcagtccattcaacatagttatttggatattactagcttacatgtatgatattagttttgtacaaccaatttttgatttgaaatgttag |
30812684 |
T |
|
| Q |
102 |
tataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgt |
201 |
Q |
| |
|
||||||| ||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||| || ||| ||||||||||||||||||| | |
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|
| T |
30812683 |
tataacagttggatgttgccctgttgattaagagtgttagtaatagcttgttgaatctttaggtactgaatc-------agttcttactcttggttattt |
30812591 |
T |
|
| Q |
202 |
ataattgttgctcaatttttgttccctgctcaact |
236 |
Q |
| |
|
|||||||||||| ||||| ||||||| |||||||| |
|
|
| T |
30812590 |
ataattgttgcttaatttatgttcccagctcaact |
30812556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 12592717 - 12592521
Alignment:
| Q |
33 |
atttggatattactagcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgttagtataacaattggatgctacccttttgatttg |
132 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||| |
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|
| T |
12592717 |
atttggatattactagcttacatgtatgttatcagttttgtacaaccaacttttgatttggaatgttagtataacagttggatgctgcccttttgattta |
12592618 |
T |
|
| Q |
133 |
gagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttatgtataattgttgctcaatttttgttccctgctc |
232 |
Q |
| |
|
| |||| |||||||||| ||||||||||||||| | |||| | ||||| ||||||||||||||||||| ||||| ||||| ||||||| |||| |
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|
| T |
12592617 |
gtttgttagtaatagcttattgaatctttaggtactacatc-------aattctttctcttggttatgtataattattgcttaatttctgttcccagctc |
12592525 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 27810781 - 27810568
Alignment:
| Q |
2 |
aaattgtcttctcaatccatccaacaccgtgatttggatattacta--gcttacatgtttgatatcagtgttgtacaaccaacttttgatttggtatgtt |
99 |
Q |
| |
|
||||||| |||||| ||||| ||||| || ||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||||| ||||| |
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|
| T |
27810781 |
aaattgtattctcagtccattcaacatagttatttggatattactatagcttacatgtatgatatcagttttgtacaaccaacttttgatttggaatgtt |
27810682 |
T |
|
| Q |
100 |
agtataacaattggatgctacccttttgatttggagtgttggtaatagcttgttgaatctttaggtattgcatcagtgcttagttcttactcttggttat |
199 |
Q |
| |
|
| || |||||||||||| ||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |
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|
| T |
27810681 |
a----------------ctgcccttttgatttagagtgttagtaatagcttgttgaatctttaggtactgcatc-------agttcttactcttggttat |
27810605 |
T |
|
| Q |
200 |
gtataattgttgctcaatttttgttccctgctcaact |
236 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||| |
|
|
| T |
27810604 |
ttataattgttgcttaatttctgttcccatctcaact |
27810568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 2942525 - 2942576
Alignment:
| Q |
185 |
cttactcttggttatgtataattgttgctcaatttttgttccctgctcaact |
236 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||| ||||||| |||||||| |
|
|
| T |
2942525 |
cttactcttggttatgtatgattgttgcttaatttctgttcccagctcaact |
2942576 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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