View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20143_low_1 (Length: 716)

Name: NF20143_low_1
Description: NF20143
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20143_low_1
NF20143_low_1
[»] chr8 (1 HSPs)
chr8 (17-695)||(26126157-26126845)


Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 695
Target Start/End: Complemental strand, 26126845 - 26126157
Alignment:
Q  17 aatatcaacttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126845 aatatcaacttcaataattgagcaatgtcactcacagcagtgttctatccacattgcctaatttactcctaaagattcaagagatcttttagcattagta 26126746  T
Q  117 cagaaaggtttgtaaccttttagcgtttcctctcaaaactgaaacataagtatattccaaattcattactcattaatcattgtcttcaaattactcgtct 216  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126745 cagaaaggtttgtaaccttttggcgtttcctctcaaaactgaaacataagtatattccaaattcattactcattaatcattgtcttcaaattactcgtct 26126646  T
Q  217 tgtcaccttccggatgcatcttctccctcagttaaaatccttgctgccgtcacacaactatccaaaactcagaatcgatgtgagatatctagaagtggga 316  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26126645 cgtcaccttccggatgcatcttctccctcagttaaaatccttgctgccgttacacaactatccaaaactcaaaatcgatgtgagatatctagaagtggga 26126546  T
Q  317 aaaatttaacaaatatccaaaacttgttcagtgttggctcttttttgttgcca-nnnnnnngttaccaatcagtgggggtgactaggtt---------tg 406  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||| ||||||||         ||    
T  26126545 aaaatttaacaaatatccaaaacttgttcagtgttggctcttttttgttgccattttttttgttaccaatcagtgggggtaactaggtttgatgcatatg 26126446  T
Q  407 caaggaagccccttcctccaccttatttattgccagttttccatggggtaccgctaagttccctcatccagtcatctcagtaaaaagattttatattttt 506  Q
    ||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  26126445 caagggagccccttcctccaccttatttattgccagttttccacggggtgccgctaagttccctcatccagtcatcccagtaaaaagattttatattttt 26126346  T
Q  507 aggttagaagaaagatttggagtaggaaatatattgttggaatcacataaatgatgttgttcaaaagacgaaggtgtaagaaatagttcacatgttttgg 606  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||    
T  26126345 aggttagaagaaagatttggagtaggaaatatattgttggaatcacataaatgatgtagttcaaaagacgaaggcgtaagaaatagttcacgtgttttgg 26126246  T
Q  607 tcgggaggaaagatatgatgctacaaaacactctatcggactttgtgccttacgacattctatctttactactgatcaaaacatgtgta 695  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26126245 tcgggaggaaagataggatgctacaaaacactctatcggactttgtgccttacgacattctatctttactactgatcaaaacatgtgta 26126157  T

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